Skip to content

Commit

Permalink
Main mutable configs
Browse files Browse the repository at this point in the history
  • Loading branch information
natefoo committed Jun 23, 2017
1 parent c3f3155 commit d3d2a47
Show file tree
Hide file tree
Showing 2 changed files with 5,166 additions and 0 deletions.
126 changes: 126 additions & 0 deletions files/galaxy/usegalaxy.org/var/integrated_tool_panel.xml
Expand Up @@ -806,6 +806,132 @@
<tool id="toolshed.g2.bx.psu.edu/repos/jjohnson/mothur_toolsuite/mothur_align_check/1.20.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/jjohnson/mothur_toolsuite/mothur_chop_seqs/1.20.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/jjohnson/mothur_toolsuite/mothur_filter_seqs/1.20.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_venn/mothur_venn/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_unique_seqs/mothur_unique_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_unifrac_weighted/mothur_unifrac_weighted/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_unifrac_unweighted/mothur_unifrac_unweighted/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_trim_seqs/mothur_trim_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_trim_flows/mothur_trim_flows/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_tree_shared/mothur_tree_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_tax/mothur_summary_tax/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_single/mothur_summary_single/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_shared/mothur_summary_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_seqs/mothur_summary_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_summary_qual/mothur_summary_qual/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_sub_sample/mothur_sub_sample/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_split_groups/mothur_split_groups/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_split_abund/mothur_split_abund/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_sort_seqs/mothur_sort_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_shhh_seqs/mothur_shhh_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_shhh_flows/mothur_shhh_flows/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_sffinfo/mothur_sffinfo/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_seq_error/mothur_seq_error/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_sens_spec/mothur_sens_spec/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_screen_seqs/mothur_screen_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_reverse_seqs/mothur_reverse_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_seqs/mothur_remove_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_rare/mothur_remove_rare/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_otus/mothur_remove_otus/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_otulabels/mothur_remove_otulabels/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_lineage/mothur_remove_lineage/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_groups/mothur_remove_groups/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_remove_dists/mothur_remove_dists/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_rarefaction_single/mothur_rarefaction_single/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_rarefaction_shared/mothur_rarefaction_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_primer_design/mothur_primer_design/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_pre_cluster/mothur_pre_cluster/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_phylotype/mothur_phylotype/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_phylo_diversity/mothur_phylo_diversity/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_pcr_seqs/mothur_pcr_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_pcoa/mothur_pcoa/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_pca/mothur_pca/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_parsimony/mothur_parsimony/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_parse_list/mothur_parse_list/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_pairwise_seqs/mothur_pairwise_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_hierarchy/mothur_otu_hierarchy/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_otu_association/mothur_otu_association/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_normalize_shared/mothur_normalize_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_nmds/mothur_nmds/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_mimarks_attributes/mothur_mimarks_attributes/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_metastats/mothur_metastats/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_taxsummary/mothur_merge_taxsummary/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_sfffiles/mothur_merge_sfffiles/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_groups/mothur_merge_groups/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_merge_files/mothur_merge_files/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_mantel/mothur_mantel/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_sra/mothur_make_sra/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_shared/mothur_make_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_lookup/mothur_make_lookup/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_lefse/mothur_make_lefse/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_group/mothur_make_group/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_fastq/mothur_make_fastq/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_design/mothur_make_design/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_contigs/mothur_make_contigs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_make_biom/mothur_make_biom/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_list_seqs/mothur_list_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_list_otulabels/mothur_list_otulabels/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_libshuff/mothur_libshuff/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_lefse/mothur_lefse/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_indicator/mothur_indicator/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_homova/mothur_homova/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_sim/mothur_heatmap_sim/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_heatmap_bin/mothur_heatmap_bin/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_hcluster/mothur_hcluster/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_sharedseqs/mothur_get_sharedseqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_seqs/mothur_get_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_sabund/mothur_get_sabund/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_relabund/mothur_get_relabund/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_rabund/mothur_get_rabund/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_otus/mothur_get_otus/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_oturep/mothur_get_oturep/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_otulist/mothur_get_otulist/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_otulabels/mothur_get_otulabels/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_mimarkspackage/mothur_get_mimarkspackage/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_lineage/mothur_get_lineage/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_label/mothur_get_label/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_groups/mothur_get_groups/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_group/mothur_get_group/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_dists/mothur_get_dists/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_coremicrobiome/mothur_get_coremicrobiome/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_get_communitytype/mothur_get_communitytype/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_shared/mothur_filter_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_filter_seqs/mothur_filter_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_fastq_info/mothur_fastq_info/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_shared/mothur_dist_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_dist_seqs/mothur_dist_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_tree/mothur_deunique_tree/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_deunique_seqs/mothur_deunique_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_degap_seqs/mothur_degap_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_create_database/mothur_create_database/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_seqs/mothur_count_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_count_groups/mothur_count_groups/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_corr_axes/mothur_corr_axes/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_cooccurrence/mothur_cooccurrence/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_consensus_seqs/mothur_consensus_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_collect_single/mothur_collect_single/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_collect_shared/mothur_collect_shared/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_split/mothur_cluster_split/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_fragments/mothur_cluster_fragments/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster_classic/mothur_cluster_classic/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_cluster/mothur_cluster/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_clearcut/mothur_clearcut/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_tree/mothur_classify_tree/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_seqs/mothur_classify_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_rf/mothur_classify_rf/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_classify_otu/mothur_classify_otu/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chop_seqs/mothur_chop_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_uchime/mothur_chimera_uchime/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_slayer/mothur_chimera_slayer/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_pintail/mothur_chimera_pintail/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_perseus/mothur_chimera_perseus/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_check/mothur_chimera_check/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_ccode/mothur_chimera_ccode/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_chimera_bellerophon/mothur_chimera_bellerophon/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_bin_seqs/mothur_bin_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_anosim/mothur_anosim/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_amova/mothur_amova/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_seqs/mothur_align_seqs/1.36.1.0" />
<tool id="toolshed.g2.bx.psu.edu/repos/iuc/mothur_align_check/mothur_align_check/1.36.1.0" />
</section>
<section id="features" name="Extract Features" version="">
</section>
Expand Down

0 comments on commit d3d2a47

Please sign in to comment.