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Link to UCSC for dm6 is disconnected at UseGalaxy.eu #648

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jennaj opened this issue Nov 6, 2023 · 4 comments · Fixed by usegalaxy-eu/infrastructure-playbook#1022
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bug Something isn't working site/eu usegalaxy.eu and related sites

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@jennaj
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jennaj commented Nov 6, 2023

Might be related to this change.
galaxyproject/galaxy#16700

Works at ORG OK for human + dm6 (and others over last weeks, post recent updates at UCSC), and other genomes work Ok at EU, including human. Odd. Maybe something else is going on with dm6?

ORG: https://usegalaxy.org/u/jen-galaxyproject/h/test-dm6-ucsc-links-tofrom

EU: https://usegalaxy.eu/u/jenj/h/test-dm6-ucsc-links-tofrom

How to see the problem:

  1. Expand the first dataset with dm6 database metadata
  2. Click on the Visualize icon
  3. Notice that the UCSC browser is not listed
  4. Compare to the human test case in the same history, and across both servers

Reported at GHelp: https://help.galaxyproject.org/t/no-link-to-ucsc-to-visualise-datasets/3626/6?u=jennaj

@jennaj jennaj added bug Something isn't working site/eu usegalaxy.eu and related sites labels Nov 6, 2023
@mvdbeek
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mvdbeek commented Nov 8, 2023

Might be related to this change.

Not related. Something for the usegalaxy.eu folks to fix, this isn't the right place. I don't know what place to report this except maybe the usegalaxy_eu gitter channel ? @bgruening ?

@mvdbeek mvdbeek closed this as completed Nov 8, 2023
@moxgreen
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moxgreen commented Nov 20, 2023

The problem still persists. The status of this issue should not be "done"

@moxgreen
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moxgreen commented Nov 20, 2023

.

@mvdbeek
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mvdbeek commented Nov 21, 2023

Well, this ain't the right place to report it.

@galaxyproject galaxyproject locked and limited conversation to collaborators Nov 21, 2023
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3 participants