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Can we replace bwa to minimap2? #15

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shig913 opened this issue Mar 30, 2021 · 1 comment

shig913 commented Mar 30, 2021

Hi,

BWA process in LGAM seems to be very slow. Can we replace bwa with minimap2 and "-x map-pb/ont" option?
I think they are compatible.

Best wiches,

Collaborator

mawad89 commented Mar 30, 2021

Hi;
Yes, you can use any mapping tool.
Best wishes

mawad89 closed this as completed

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