eXamol

Visualisation of atom groups in molecular graphs with eXamol (based on the eXamine engine).

Compilation instruction

Apache Maven is required to compile the code via:

mvn install

Execution

java -jar examines.jar

Example

Fig 1: Taxol - Skeletal Structure Formula

Fig 2: Taxol - Skeletal Structure Formula

eXamine Framework

"eXamine is a Cytoscape app for a set-oriented visual analysis approach for annotated modules that displays set membership as contours on top of a node-link layout."

BMC Bioinformatics. 2014 Jul 10;15:201. doi: 10.1186/1471-2105-15-201.

Dinkla K, El-Kebir M, Bucur CI, Siderius M, Smit MJ, Westenberg MA1, Klau GW.

https://github.com/ls-cwi/eXamine