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Dev #31

Merged
merged 5 commits into from Feb 28, 2019
Merged

Dev #31

merged 5 commits into from Feb 28, 2019

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bshifaw
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@bshifaw bshifaw commented Feb 24, 2019

Updated to gatk4.1,
Update VariantRecal syntax to work for gatk4.1
Added samtools path variable in haplotypecaller wdl
Add a version of joint-discovery that takes in an array for gvcfs to be used on Terra/FC
Set the docker version and disk size in the joint-discovery wdl, but made override options

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@ldgauthier ldgauthier left a comment

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Looks fine.

@bshifaw bshifaw merged commit 63c7ac0 into master Feb 28, 2019
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