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This repository has been archived by the owner on May 13, 2020. It is now read-only.

Initial Release of Somatic CNV
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@bshifaw bshifaw released this 25 May 19:05
· 8 commits to master since this release
1.0.0
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Learn about vigilant mode.

This is the initial release of the workflow for running Somatic CNV.
It includes the following main WDLs

  • Building a panel of normals (PoN): cnv_somatic_panel_workflow.wdl
  • Running a matched pair: cnv_somatic_pair_workflow.wdl

Suboworkflows called by the main workflows are listed bellow

  • cnv_somatic_oncotator_workflow.wdl
  • cnv_common_tasks.wdl

Example Json files are present for demonstration purposes only.

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