Discussions

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  recombination frequency

  Anilkumargpb started Apr 17, 2024 in General

  

  

  

  

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  simulated data vs rsequence data

  ramesh121412 started Mar 28, 2024 in General

  

  

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  error in pullSnpGeno() function

  Anilkumargpb asked Mar 25, 2024 in Q&A · Unanswered

  

  

  

  

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  vcf format

  naio5 started Feb 19, 2024 in General

  

  

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  Welcome to AlphaSimR Discussions!

  gaynorr announced Dec 9, 2021 in Announcements

  

  

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  Simulation Mechanism

  sandeepgowdan asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  Burn-in Phase Necessit

  sandeepgowdan asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  Heritability Analysis

  sandeepgowdan asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  Identification of Segregation Sites and QTLs

  sandeepgowdan asked Feb 12, 2024 in Q&A · Unanswered

  

  

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  Simulate QTL effects / traits of your own interest

  gregorgorjanc started Oct 12, 2023 in General

  

  

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  Simulating separate populations from same founders and then combining separated populations

  Nfumia asked Aug 4, 2023 in Q&A · Closed · Unanswered

  

  

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  Show how to do more general types of selection (balancing, diverging etc.)

  gregorgorjanc started Jul 25, 2023 in General

  

  

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  Run independent runMacs() and merge outputs together

  gregorgorjanc started Jul 25, 2023 in General

  

  

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  Do we have an output to the magnitude of the QTL effects?

  alanaselli asked Jul 19, 2023 in Q&A · Answered

  

  

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  Repository/collection of scripts, functions, ...

  gregorgorjanc started Jun 11, 2023 in Ideas

  

  

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  Error in pop@ebv[, trait, drop=FALSE]: subscript out of bounds

  Dkplucas asked May 4, 2023 in Q&A · Unanswered

  

  

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  Issue related to an Article based on AlphasimR

  Dkplucas asked Apr 24, 2023 in Q&A · Answered

  

  

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  Genomic selection with individuals partially phenotyped for the different traits

  florianherry asked Apr 19, 2023 in Q&A · Unanswered

  

  

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  Generation of "genMap" and "haplo" objects from PLINK .bed , .bim and .fam files and using real genomic information in AlphaSimR

  Leo4Luffy asked Mar 28, 2023 in Q&A · Answered

  

  

  

  

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  fixEff in RRBLUP() function

  marcopxt asked Mar 23, 2023 in Q&A · Unanswered

  

  

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  Difference between Breeding value (bv); estimation of the breeding value (ebv); Genetic value (gv) in AlphasimR simulation

  Dkplucas asked Feb 17, 2023 in Q&A · Answered

  

  

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  Better GE rate simulation?

  jamonterotena started Jan 31, 2023 in Ideas

  

  

  

  

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  true vs. estimated breeding values for bias estimation

  alanmaxsp asked Jan 25, 2023 in Q&A · Answered

  

  

  

  

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  Breeding values relative to other population, say base population

  gregorgorjanc started Sep 26, 2022 in Ideas

  

  

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  phenotypic mean & signing the estimated (genomic) breeding values by external program

  Hasan-Baneh asked Sep 7, 2022 in Q&A · Unanswered

  

  

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