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added md5sum script

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commit 76378342e2f2428b3ce7ababd6a07a7ee36c6e3e 1 parent da61579
@gbenison authored
Showing with 7 additions and 0 deletions.
  1. +7 −0 fastamd5
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7 fastamd5
@@ -0,0 +1,7 @@
+#!/bin/sh
+# GCB 24oct11 generate an MD5 sum of just the sequence, skipping the header and any whitespace
+
+basedir=`dirname $0`;
+
+${basedir}/fastalint $1 | egrep -v '^>' | perl -ane '{chomp; print;}' | md5sum
+
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