fix issue with parsing gff headers

gbouras13 · Mar 12, 2024 · c31939f · c31939f
1 parent dbcb25e
commit c31939f
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Showing 3 changed files with 4 additions and 3 deletions.
diff --git a/bin/processes.py b/bin/processes.py
@@ -379,6 +379,7 @@ def tidy_phanotate_output(out_dir):
         names=col_list,
         skiprows=2,
         dtype=dtype_dict,
+        comment='#'  # to skip the headers
     )
     # get rid of the headers and reset the index
     phan_df = phan_df[phan_df["start"] != "#id:"]
@@ -438,8 +439,8 @@ def tidy_prodigal_output(out_dir, gv_flag):
         delimiter="\t",
         index_col=False,
         names=col_list,
-        skiprows=3,
         dtype=dtype_dict,
+        comment='#'  # to skip the headers
     )
 
     # meta mode brings in some Nas so remove them

diff --git a/bin/version.py b/bin/version.py
@@ -1 +1 @@
-__version__ = "1.7.0"
+__version__ = "1.7.1"
diff --git a/setup.py b/setup.py
@@ -19,7 +19,7 @@ def package_files(directory):
 
 setup(
     name="Pharokka",
-    version="1.7.0",
+    version="1.7.1",
     author="George Bouras",
     author_email="george.bouras@adelaide.edu.au",
     description="Fast phage annotation tool",