Error for any command in the package

[dkunichoff]

I continuously get this error when I try to use expss package in the way described in the Tables with Labels document. The error is as follows:

Error in setalloccol(ans) : could not find function "setalloccol"

This is happening after the "cro" command and others. Even re-installed the package and it still occurs.

[gdemin]

Also try to reinstall 'data.table' package. And, please, provide result of the systemInfo() function.

[Mayday1979]

I suppose it is a problem with new version of data.table
Error in data.table(x = x, weight = weight) : oggetto "CcopyNamedInList" not found
This is happening after the "fre" command and others

I tried to reinstall both expss and data.table with no results

[gdemin]

@Mayday1979 Could you provide result of your sessionInfo()?

[Mayday1979]

@Mayday1979 Could you provide result of your sessionInfo()?

sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] it_IT.UTF-8/it_IT.UTF-8/it_IT.UTF-8/C/it_IT.UTF-8/it_IT.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

loaded via a namespace (and not attached):
[1] compiler_3.6.1

[gdemin]

@Mayday1979
See https://stackoverflow.com/questions/58546705/r-shiny-app-works-locally-but-after-deployment-i-get-an-error-with-i-believe-d/58550571#58550571
Perhaps reinstalling both packages with absolutely clean session will help?

[gdemin]

@Mayday1979 If you still experience problems, please, run the following:

require(data.table)
test.data.table()

What output it gives?

[Mayday1979]

test.data.table() Running test id 2120.08 nning test id 2042.3 Running test id 2043.1 10 longest running tests took 24s (40% of 60s) ID time nTest 1: 1729 6.784 13 2: 1888 3.489 9 3: 1874 2.868 5 4: 1223 2.249 728 5: 1438 1.728 354 6: 1252 1.718 484 7: 1848 1.649 1 8: 1912 1.282 2 9: 1437 1.205 36 10: 1642 1.172 45 Error in test.data.table() : 3 errors out of 8725 in 00:01:00 elapsed (00:01:25 cpu) on Mon Oct 28 18:02:41 2019. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Rome, locale='it_IT.UTF-8/it_IT.UTF-8/it_IT.UTF-8/C/it_IT.UTF-8/it_IT.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==4; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2147483647; omp_get_max_threads()==4; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw for test numbers: 1936.2, 2042.2, 2042.3. Il giorno lun 28 ott 2019 alle ore 14:32 Gregory Demin < notifications@github.com> ha scritto:

…

@Mayday1979 <https://github.com/Mayday1979> If you still experience problems, please, run the following: require(data.table) test.data.table() What output it gives? — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#42?email_source=notifications&email_token=AKTJ7LPKTRESTJXF4FFLTCTQQ3SXPA5CNFSM4JCIOT5KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECM4BLI#issuecomment-546947245>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKTJ7LKLVN4INCMZ2KTWOF3QQ3SXPANCNFSM4JCIOT5A> .

-- Renato Medei Via Coldilana 15 63822 Porto San Giorgio - FM- Email: medei.ren@gmail.com Contact me: [image: Skype] renatomedei Please consider the environment before printing this e-mail! IMPORTANT: The contents of this email and any attachments are confidential. They are intended for the named recipient(s) only. If you have received this email by mistake, please notify the sender immediately and do not disclose the contents to anyone or make copies thereof.

[mattdowle]

@Mayday1979 Thanks but it looks like you've excluded the messages we need from the output. Scroll up and you should see messages for tests 1936.2, 2042.2 and 2042.3. We need to see that output please. I looked at the source of those tests and my guess is that's probably just a benign time zone difference, though. It should pass and I need to look at that, but it's unrelated to the could not find setalloccol error. That's either a corrupt installation, or another package has somehow cached the old version, or something like that. Try searching your file system for datatable.dll and looking for multiple and conflicting versions, check your library path etc, and ask the Shiny people if they know anything about cro (my guess is that stands for cached r objects, and that cache needs to be refreshed).

[josie-athens]

I confirm I get the same error after updating expss.

I tried reinstalling data.table and expss. I did that twice, the second time after reboot.

Information is as follows:

library(expss)
data(mtcars)
mtcars = modify(mtcars,{

• var_lab(vs) = "Engine"
  

• val_lab(vs) = c("V-engine" = 0, 
  

•                 "Straight engine" = 1) 
  

• var_lab(am) = "Transmission"
  

• val_lab(am) = c(automatic = 0, 
  

•                 manual=1)
  

• })

fre(mtcars$vs)
Error in data.table(x = x, weight = weight) :
object 'CcopyNamedInList' not found
sessionInfo()
R version 3.6.1 (2019-07-05)
Platform: x86_64-apple-darwin15.6.0 (64-bit)
Running under: macOS Catalina 10.15

Matrix products: default
BLAS: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRblas.0.dylib
LAPACK: /Library/Frameworks/R.framework/Versions/3.6/Resources/lib/libRlapack.dylib

locale:
[1] en_NZ.UTF-8/en_NZ.UTF-8/en_NZ.UTF-8/C/en_NZ.UTF-8/en_NZ.UTF-8

attached base packages:
[1] stats graphics grDevices utils datasets methods base

other attached packages:
[1] expss_0.9.1

loaded via a namespace (and not attached):
[1] Rcpp_1.0.2 matrixStats_0.55.0 digest_0.6.22
[4] backports_1.1.5 magrittr_1.5 stringi_1.4.3
[7] rlang_0.4.1 data.table_1.12.6 rstudioapi_0.10
[10] checkmate_1.9.4 tools_3.6.1 stringr_1.4.0
[13] foreign_0.8-72 htmlwidgets_1.5.1 xfun_0.10
[16] compiler_3.6.1 htmltools_0.4.0 knitr_1.25
[19] htmlTable_1.13.2

require(data.table)
Loading required package: data.table
data.table 1.12.6 using 4 threads (see ?getDTthreads). Latest news: r-datatable.com

Attaching package: ‘data.table’

The following objects are masked from ‘package:expss’:

copy, data.table, like, setkeyv

test.data.table()
getDTthreads(verbose=TRUE):
omp_get_num_procs() 8
R_DATATABLE_NUM_PROCS_PERCENT unset (default 50)
R_DATATABLE_NUM_THREADS unset
omp_get_thread_limit() 2147483647
omp_get_max_threads() 8
OMP_THREAD_LIMIT unset
OMP_NUM_THREADS unset
RestoreAfterFork true
data.table is using 4 threads. See ?setDTthreads.
test.data.table() running: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/data.table/tests/tests.Rraw.bz2
Running test id 2120.08 nning test id 1987.1 Running test id 1748.3 Running test id 1748.4 Running test id 1749.1
10 longest running tests took 15s (42% of 36s)
ID time nTest
1: 1729 5.086 13
2: 1888 1.964 9
3: 1874 1.632 5
4: 1223 1.355 728
5: 1252 1.040 484
6: 1438 0.940 354
7: 1848 0.937 1
8: 1437 0.936 36
9: 1912 0.869 2
10: 1648 0.590 45
Error in test.data.table() :
6 errors out of 8747 in 36.5s elapsed (00:01:48 cpu) on Fri Nov 1 11:12:49 2019. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Pacific/Auckland, locale='en_NZ.UTF-8/en_NZ.UTF-8/en_NZ.UTF-8/C/en_NZ.UTF-8/en_NZ.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==8; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2147483647; omp_get_max_threads()==8; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 4 threads. See ?setDTthreads.']. Search tests/tests.Rraw.bz2 for test numbers: 1748.1, 1748.2, 1748.3, 1748.4, 1986.2, 1986.4.

Please help with removing that error. You are doing a great job.

[gdemin]

@mattdowle Could you look at the output of the test.data.table?

[Mayday1979]

Hi there, sorry for delay, but i was so busy in the last days. This si my actual status. I removed r and rstudio from my mac and completely cleaned the R related files. I installed applications once again an now i received the error object 'CcopyNamedInList' not found This is what i received after test.data.table

test.data.table()

getDTthreads(verbose=TRUE): omp_get_num_procs() 4 R_DATATABLE_NUM_PROCS_PERCENT unset (default 50) R_DATATABLE_NUM_THREADS unset omp_get_thread_limit() 2147483647 omp_get_max_threads() 4 OMP_THREAD_LIMIT unset OMP_NUM_THREADS unset RestoreAfterFork true data.table is using 2 threads. See ?setDTthreads. test.data.table() running: /Library/Frameworks/R.framework/Versions/3.6/Resources/library/data.table/tests/tests.Rraw **** This R session's language is not English. Each test will still check that the correct number of errors and/or **** warnings are produced. However, to test the text of each error/warning too, please restart R with LANGUAGE=en Running test id 2042.2 Test 2042.2 ran without errors but failed check that x equals y:

x = DT[, format(mean(date), "%b-%Y")]

First 1 of 1 (type 'character'): [1] "Gen-2018"

y = "Jan-2018"

First 1 of 1 (type 'character'): [1] "Jan-2018" 1 string mismatch Running test id 2042.3 Test 2042.3 ran without errors but failed check that x equals y:

x = DT[, format(mean(date), "%b-%Y"), by = g, verbose = TRUE]

g V1 [Key= Types=cha,cha Classes=cha,cha] 1: a Gen-2018 2: b Gen-2018

y = data.table(g = c("a", "b"), V1 = c("Jan-2018", "Jan-2018"))

g V1 [Key= Types=cha,cha Classes=cha,cha] 1: a Jan-2018 2: b Jan-2018 Column 'V1': 2 string mismatches Running test id 2120.08 10 longest running tests took 50s (41% of 122s) ID time nTest 1: 1438 11.303 738 2: 1223 5.390 728 3: 1648 5.364 91 4: 1642 4.675 91 5: 1650 4.607 91 6: 1652 4.122 91 7: 1644 4.113 91 8: 1646 3.848 91 9: 1252 3.733 484 10: 1437 3.334 36 Error in test.data.table() : 2 errors out of 9654 in 00:02:02 elapsed (00:02:48 cpu) on Sun Nov 3 22:58:45 2019. [endian==little, sizeof(long double)==16, sizeof(pointer)==8, TZ=Europe/Rome, locale='it_IT.UTF-8/it_IT.UTF-8/it_IT.UTF-8/C/it_IT.UTF-8/it_IT.UTF-8', l10n_info()='MBCS=TRUE; UTF-8=TRUE; Latin-1=FALSE', getDTthreads()='omp_get_num_procs()==4; R_DATATABLE_NUM_PROCS_PERCENT==unset (default 50); R_DATATABLE_NUM_THREADS==unset; omp_get_thread_limit()==2147483647; omp_get_max_threads()==4; OMP_THREAD_LIMIT==unset; OMP_NUM_THREADS==unset; RestoreAfterFork==true; data.table is using 2 threads. See ?setDTthreads.']. Search tests/tests.Rraw for test numbers: 2042.2, 2042.3. if you need specific output please give me the command. regards Il giorno mar 29 ott 2019 alle ore 00:26 Matt Dowle < notifications@github.com> ha scritto:

…

@Mayday1979 <https://github.com/Mayday1979> Thanks but it looks like you've excluded the messages we need from the output. Scroll up and you should see messages for tests 1936.2, 2042.2 and 2042.3. We need to see that output please. I looked at the source of those tests and my guess is that's probably just a benign time zone difference. It should pass and I need to look at that, but it's unrelated to the could not find setalloccol error. — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#42?email_source=notifications&email_token=AKTJ7LKOUFMM2MIYMTNQQ2DQQ5YJXA5CNFSM4JCIOT5KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOECOXEJQ#issuecomment-547189286>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKTJ7LP4DNOOWT724ARDO6DQQ5YJXANCNFSM4JCIOT5A> .

-- Renato Medei Via Coldilana 15 63822 Porto San Giorgio - FM- Email: medei.ren@gmail.com Contact me: [image: Skype] renatomedei Please consider the environment before printing this e-mail! IMPORTANT: The contents of this email and any attachments are confidential. They are intended for the named recipient(s) only. If you have received this email by mistake, please notify the sender immediately and do not disclose the contents to anyone or make copies thereof.

[gdemin]

@Mayday1979
Do you have installed XCode?
If yes, could you install both packages from source?

install.packages(c("data.table", "expss"), type = "source")

Or, I think, without Xcode it is possible to install from source expss:

install.packages("expss", type = "source")

[josie-athens]

Yes! That worked, installing both packages from source.

Just to be clear for future reference, what I did was:

1. Access R from bash terminal.
2. Remove data.table and expss
3. Install data.table and expss from source

My first mistake, again for future reference, was updating for expss while expss was already loaded into the session.

Thank you!

[Mayday1979]

Yes, it worked. Thanks for your support Il giorno dom 3 nov 2019 alle ore 23:09 Gregory Demin < notifications@github.com> ha scritto:

…

@Mayday1979 <https://github.com/Mayday1979> Do you have installed XCode? If yes, could you install both packages from source? install.packages(c("data.table", "expss"), type = "source") — You are receiving this because you were mentioned. Reply to this email directly, view it on GitHub <#42?email_source=notifications&email_token=AKTJ7LI6MOPH2UFBAVPK4JDQR5DZJA5CNFSM4JCIOT5KYY3PNVWWK3TUL52HS4DFVREXG43VMVBW63LNMVXHJKTDN5WW2ZLOORPWSZGOEC56FUA#issuecomment-549184208>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/AKTJ7LKJT6OAJBCYIV3EMKLQR5DZJANCNFSM4JCIOT5A> .

-- Renato Medei Via Coldilana 15 63822 Porto San Giorgio - FM- Email: medei.ren@gmail.com Contact me: [image: Skype] renatomedei Please consider the environment before printing this e-mail! IMPORTANT: The contents of this email and any attachments are confidential. They are intended for the named recipient(s) only. If you have received this email by mistake, please notify the sender immediately and do not disclose the contents to anyone or make copies thereof.