3D-analysis-mitochondria

Image J macro to identify mitochondria on Confocal z-stacks and carry out quantifications of volume and sphericity. Explanation of the code is given in comments within the file. Requires 3D ImageJ Suite (1) on ImageJ Fiji (2).

1. Ollion, J., Cochennec, J., Loll, F., Escude, C. & Boudier, T. TANGO: a generic tool for high-throughput 3D image analysis for studying nuclear organization. Bioinformatics 29, 1840-1841, doi:10.1093/bioinformatics/btt276 (2013).
2. Schindelin, J. et al. Fiji: an open-source platform for biological-image analysis. Nat Methods 9, 676-682, doi:10.1038/nmeth.2019 (2012).