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ChangeLog
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======================================================================
Originator: Chris Fischer
Date: 4-19-2020
Tag: cime5.8.23
Answer Changes: roundoff for some compsets, bfb for others
Tests: scripts_regressions_tests
Dependencies:
Brief Summary:
- Improvement to scripts regression tests on the Melvin machine.
- Fix atm level spec so that it does not match 1x1_brazil.
- Document provenance from COARE/Fairall surface flux scheme option.
- Add missing ROF2OCN grid for r05_TO_gx3v7.
- Updates to CIME used for 0.1 degree JRA-forced G run with BGC enabled.
- FV3 bug fix and Makefile update.
- Update cheyenne ESMF libs.
- case.setup: fix merge error from prev PR.
- case.setup: fix case.setup --clean.
- First steps to ESMF data models.
- Allow user to specify an extra machines directory in create_newcase.
- Remove code specific to ORNL machine.
User interface changes:
- Adds --extra-machines-dir argument to create_newcase.
PR summary: git log --oneline --first-parent [previous_tag]..master
332d8c9b3 Merge pull request #3522 from ESMCI/wpcoomb/melvin_regression_tests_improvements
6d745aa6b Merge pull request #3519 from jedwards4b/atm_level_fix
850bef781 Merge pull request #3520 from mt5555/patch-1
ebb9dd6c9 Merge pull request #3517 from ESMCI/fischer/r05_gx3v7
5805a40a5 Merge pull request #3515 from mnlevy1981/highres_JRA_BGC
1bc586676 Merge pull request #3516 from jtruesdal/fv3_3452
6a00e248c Merge pull request #3514 from ESMCI/fischer/esmf_libs
793764fd2 Merge pull request #3513 from ESMCI/jgfouca/fix_case_setup
25840072d Merge pull request #3511 from ESMCI/jgfouca/fix_case_clean
509f2bfa8 Merge pull request #3505 from ESMCI/mvertens/dmodels_refactor_to_esmfpre
51ac93be5 Merge pull request #3508 from billsacks/alternate_dot_cime_location
7303682ed Merge pull request #3502 from jedwards4b/remove_titan_piocode
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/machines/config_machines.xml
M config/xml_schemas/config_machines_template.xml
M scripts/Tools/Makefile
M scripts/create_newcase
M scripts/fortran_unit_testing/run_tests.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/SystemTests/erio.py
M scripts/lib/CIME/XML/batch.py
M scripts/lib/CIME/XML/compilers.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_setup.py
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.csm_share
M src/components/data_comps_nuopc/datm/cime_config/buildnml
M src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
D src/components/data_comps_nuopc/datm/src/datm_comp_mod.F90
M src/components/data_comps_nuopc/dice/cime_config/buildnml
M src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
D src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
M src/components/data_comps_nuopc/dice/src/ice_comp_nuopc.F90
M src/components/data_comps_nuopc/dlnd/cime_config/buildnml
M src/components/data_comps_nuopc/dlnd/cime_config/namelist_definition_dlnd.xml
D src/components/data_comps_nuopc/dlnd/src/dlnd_comp_mod.F90
M src/components/data_comps_nuopc/dlnd/src/lnd_comp_nuopc.F90
M src/components/data_comps_nuopc/docn/cime_config/buildnml
M src/components/data_comps_nuopc/docn/cime_config/namelist_definition_docn.xml
D src/components/data_comps_nuopc/docn/src/docn_comp_mod.F90
M src/components/data_comps_nuopc/docn/src/ocn_comp_nuopc.F90
M src/components/data_comps_nuopc/drof/cime_config/buildnml
M src/components/data_comps_nuopc/drof/cime_config/namelist_definition_drof.xml
D src/components/data_comps_nuopc/drof/src/drof_comp_mod.F90
M src/components/data_comps_nuopc/drof/src/rof_comp_nuopc.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_dfield_mod.F90
M src/components/data_comps_nuopc/dshr_nuopc/dshr_fldlist_mod.F90
R063 src/components/data_comps_nuopc/dshr_nuopc/dshr_nuopc_mod.F90 src/components/data_comps_nuopc/dshr_nuopc/dshr_mod.F90
M src/components/data_comps_nuopc/dwav/cime_config/buildnml
M src/components/data_comps_nuopc/dwav/cime_config/namelist_definition_dwav.xml
D src/components/data_comps_nuopc/dwav/src/dwav_comp_mod.F90
M src/components/data_comps_nuopc/dwav/src/wav_comp_nuopc.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/share/streams/shr_stream_mod.F90
R058 src/components/data_comps_nuopc/dshr_nuopc/dshr_methods_mod.F90 src/share/streams_nuopc/dshr_methods_mod.F90
A src/share/streams_nuopc/dshr_strdata_mod.F90
A src/share/streams_nuopc/dshr_stream_mod.F90
A src/share/streams_nuopc/dshr_tInterp_mod.F90
M src/share/util/shr_flux_mod.F90
M utils/perl5lib/Config/SetupTools.pm
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-26-2020
Tag: cime5.8.22
Answer Changes: b4b
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Fix issue with mpi-serial io.
- Use esmf8.1.0b14 on cheyenne.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
3b4ea8a99 Merge pull request #3499 from jedwards4b/pio_serialio_fix
eb2e04e52 Merge pull request #3494 from jedwards4b/update_cheyenne_esmf
Modified files: git diff --name-status [previous_tag]
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M scripts/Tools/Makefile
M src/externals/pio2/src/flib/piolib_mod.F90
M src/share/util/shr_pio_mod.F90
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-17-2020
Tag: cime5.8.21
Answer Changes: None
Tests: scripts_regression_tests
CIME_MODEL=cesm; CIME_DRIVER=nuopc; ./scripts_regression_tests.py
Dependencies:
Brief Summary:
- Use shrmap by reference instead of copy.
- nuopc_updates for scripts_regression_tests, esmf on cheyenne
- e3sm_cime_mgmt hotfix for both-removed conflicts
- Allow for specification of vertical grid in ATM_GRID.
- Recognize when a machine listed in config_machines.xml has no entries.
- Fix case reset on some machines.
- Fix pylint issues.
- Bring back the setting of dlnd strm_domdir and strm_domfil to null.
- Bugfixes and changes that permit cmeps to run without a mediator.
- Some changes to cprnc's CMakeLists.txt.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
979ab8433 Merge pull request #3470 from jedwards4b/shr_map_getARptr
4525d6a4e Merge pull request #3490 from jedwards4b/nuopc_updates
3c9fa143f e3sm_cime_mgmt hotfix for both-removed conflicts
22aab810e Merge pull request #3492 from jedwards4b/atm_vert_grid_fix
37a74cf5b Merge pull request #3468 from ESMCI/wpcoomb/user_defined_env_variables
79a8e11e6 Merge pull request #3475 from ESMCI/jgfouca/fix_case_reset
abbf05745 fix pylint issue
7bbbc40fa Merge pull request #3486 from billsacks/fix_dlnd_streams
15893bcaf Merge pull request #3484 from ESMCI/mvertens/nuopc_bugfixes
4bc65d82b Merge pull request #3483 from ESMCI/jgfouca/cprnc_improve_cmake
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids_nuopc.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M scripts/Tools/Makefile
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/XML/env_mach_specific.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/pio.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/namelist.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/e3sm_cime_mgmt.py
M scripts/tests/scripts_regression_tests.py
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
M src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
M src/components/data_comps_nuopc/docn/src/docn_comp_mod.F90
M src/components/data_comps_nuopc/drof/src/drof_comp_mod.F90
M src/drivers/mct/cime_config/buildnml
M src/drivers/mct/cime_config/config_component.xml
M src/share/nuopc/seq_drydep_mod.F90
M src/share/nuopc/shr_fire_emis_mod.F90
M src/share/nuopc/shr_megan_mod.F90
M src/share/nuopc/shr_ndep_mod.F90
M src/share/streams/shr_dmodel_mod.F90
M src/share/timing/perf_mod.F90
M src/share/util/shr_map_mod.F90
M src/share/util/shr_sys_mod.F90
M tools/cprnc/CMakeLists.txt
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-7-2020
Tag: cime5.8.20
Answer Changes: None
Tests: scripts_regression_tests, check_inputdata
Dependencies:
Brief Summary:
- Add ftp timeout, fix failover to svn.
- E3SM 03-16-2020 merger.
- Remove unneeded encodes.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
708a9338b Merge pull request #3479 from jedwards4b/ftp_timeout
263de7e86 Merge pull request #3457 from ESMCI/jgfouca/branch-for-acme-split-2020-03-16
611ca9c1e wget: hotfix, remove unneeded encodes
Modified files: git diff --name-status [previous_tag]
M config/config_tests.xml
M config/e3sm/allactive/config_pesall.xml
M config/e3sm/config_files.xml
M config/e3sm/config_grids.xml
M config/e3sm/machines/Depends.gnu.cmake
M config/e3sm/machines/Depends.ibm.cmake
M config/e3sm/machines/Depends.intel.cmake
M config/e3sm/machines/Depends.summit.pgiacc.cmake
M config/e3sm/machines/Depends.summitdev.pgiacc.cmake
D config/e3sm/machines/Depends.theta.intel
D config/e3sm/machines/Depends.theta.intel.cmake
M config/e3sm/machines/config_batch.xml
M config/e3sm/machines/config_compilers.xml
M config/e3sm/machines/config_machines.xml
A config/e3sm/testmods_dirs/bench/gmpas_noio/shell_commands
A config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpaso
A config/e3sm/testmods_dirs/bench/gmpas_noio/user_nl_mpassi
A config/e3sm/testmods_dirs/bench/wcycl/hires/shell_commands
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_cam
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpaso
A config/e3sm/testmods_dirs/bench/wcycl/hires/user_nl_mpassi
A config/e3sm/testmods_dirs/bench/wcycl/lores/shell_commands
A config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_cam
A config/e3sm/testmods_dirs/bench/wcycl/lores/user_nl_clm
M config/e3sm/tests.py
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_grids_v2.1.xsd
M config/xml_schemas/config_grids_v2.xsd
M scripts/Tools/bld_diff
M scripts/Tools/case.build
A scripts/Tools/get_case_env
M scripts/Tools/get_standard_makefile_args
M scripts/create_newcase
M scripts/lib/CIME/BuildTools/cmakemacroswriter.py
M scripts/lib/CIME/BuildTools/configure.py
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/homme.py
A scripts/lib/CIME/SystemTests/hommebaseclass.py
A scripts/lib/CIME/SystemTests/hommebfb.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/generic_xml.py
M scripts/lib/CIME/XML/grids.py
M scripts/lib/CIME/XML/machines.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/tests/scripts_regression_tests.py
A src/CMake/CorrectWindowsPaths.cmake
A src/CMake/FindPackageMultipass.cmake
A src/CMake/ResolveCompilerPaths.cmake
M src/build_scripts/buildlib.cprnc
M src/build_scripts/buildlib.csm_share
M src/build_scripts/buildlib.gptl
M src/build_scripts/buildlib.kokkos
M src/build_scripts/buildlib.mct
M src/build_scripts/buildlib.mpi-serial
M src/build_scripts/buildlib.pio
A src/build_scripts/buildlib_cmake.internal_components
A src/components/data_comps_mct/datm/cime_config/buildlib_cmake
A src/components/data_comps_mct/desp/cime_config/buildlib_cmake
A src/components/data_comps_mct/dice/cime_config/buildlib_cmake
A src/components/data_comps_mct/dlnd/cime_config/buildlib_cmake
M src/components/data_comps_mct/dlnd/cime_config/config_component.xml
M src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
A src/components/data_comps_mct/docn/cime_config/buildlib_cmake
M src/components/data_comps_mct/docn/cime_config/config_component.xml
A src/components/data_comps_mct/drof/cime_config/buildlib_cmake
A src/components/data_comps_mct/dwav/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/datm/cime_config/buildlib_cmake
M src/components/data_comps_nuopc/datm/cime_config/config_component.xml
M src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
A src/components/data_comps_nuopc/dice/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/dlnd/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/docn/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/drof/cime_config/buildlib_cmake
A src/components/data_comps_nuopc/dwav/cime_config/buildlib_cmake
A src/components/stub_comps_mct/satm/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sesp/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sglc/cime_config/buildlib_cmake
A src/components/stub_comps_mct/siac/cime_config/buildlib_cmake
A src/components/stub_comps_mct/sice/cime_config/buildlib_cmake
A src/components/stub_comps_mct/slnd/cime_config/buildlib_cmake
A src/components/stub_comps_mct/socn/cime_config/buildlib_cmake
A src/components/stub_comps_mct/srof/cime_config/buildlib_cmake
A src/components/stub_comps_mct/swav/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/satm/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sesp/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sglc/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/siac/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/sice/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/slnd/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/socn/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/srof/cime_config/buildlib_cmake
A src/components/stub_comps_nuopc/swav/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xatm/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xglc/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xice/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xlnd/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xocn/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xrof/cime_config/buildlib_cmake
A src/components/xcpl_comps_mct/xwav/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xatm/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xglc/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xice/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xlnd/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xocn/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xrof/cime_config/buildlib_cmake
A src/components/xcpl_comps_nuopc/xwav/cime_config/buildlib_cmake
A src/drivers/mct/cime_config/buildlib_cmake
M src/drivers/mct/cime_config/config_component.xml
M src/drivers/mct/cime_config/config_component_e3sm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
M src/drivers/mct/main/cime_comp_mod.F90
M src/drivers/mct/main/prep_rof_mod.F90
M src/drivers/mct/shr/seq_flds_mod.F90
M src/drivers/mct/shr/seq_infodata_mod.F90
M src/share/timing/GPTLget_memusage.c
M src/share/timing/GPTLprint_memusage.c
M src/share/timing/gptl.c
M src/share/util/shr_mem_mod.F90
M src/share/util/shr_orb_mod.F90
M src/share/util/shr_sys_mod.F90
M tools/mapping/gen_domain_files/src/gen_domain.F90
A tools/mapping/gen_domain_files/test_gen_domain.sh
======================================================================
======================================================================
Originator: Chris Fischer
Date: 4-3-2020
Tag: cime5.8.19
Answer Changes: None
Tests: scripts_regression_tests
Dependencies:
Brief Summary:
- Clean up follow maint5.6 merge.
- Change sst_aquap11 to sst_aquap_constant
- case.setup: Add --keep option
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
2656300d5 Merge pull request #3462 from mnlevy1981/cleanup_maint-5.6_merge
06760c7c2 Merge pull request #3469 from ESMCI/fischer/sst_aquap_constant
bb2d15680 Merge pull request #3464 from ESMCI/jgfouca/case_setup_keep_list
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids_common.xml
M scripts/Tools/case.setup
M scripts/lib/CIME/case/case_setup.py
M src/components/data_comps_mct/datm/cime_config/config_component.xml
M src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps_mct/datm/src/datm_comp_mod.F90
M src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
M src/drivers/mct/cime_config/config_component_cesm.xml
M src/drivers/mct/cime_config/namelist_definition_drv.xml
======================================================================
======================================================================
Originator: Chris Fischer
Date: 3-20-2020
Tag: cime5.8.18
Answer Changes: None
Tests: scripts_regression_tests, SMS.ne5pg4_ne5pg4_mg37.A
Dependencies:
Brief Summary:
- Add ne5np4.pg4 grid.
- Ensure that api documentation is rebuilt whenever rebuilding
documentation.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
f990945a7 Merge pull request #3460 from ESMCI/fischer/ne5np4
f25ecc408 Merge pull request #3454 from billsacks/doc_clean_api
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_grids.xml
M doc/Makefile
======================================================================
======================================================================
Originator: Bill Sacks
Date: 3-15-2020
Tag: cime5.8.17
Answer Changes: None
Tests: scripts_regression_tests, aux_clm
Dependencies: none
Brief Summary:
- Separate mct and nuopc data, xcpl and stub components
- Update pio2
- Documentation: provide a version dropdown menu and change theme
- Add ne5pg2_ne5pg2_mg37 grid
- Fix some issues
User interface changes: None
PR summary: git log --oneline --first-parent [previous_tag]..master
4f1880756 Merge pull request #3439 from billsacks/versioned_docs3
38c2b9f3c Merge pull request #3441 from jedwards4b/thunder_port
5d9ff806a Merge pull request #3451 from jedwards4b/check_inputdata_fix
3444503c2 Merge pull request #3449 from ESMCI/jgfouca/improve_case_setup_clean
02a8eebaa fix default for PIO_REARRANGER
49e82c611 Merge pull request #3447 from jedwards4b/pio2_update
ada1f0901 Merge pull request #3445 from ESMCI/fischer/ne5pg2
bbba1afdb Merge pull request #3444 from alperaltuntas/datm_mesh_tol
acc2d239c Merge commit 'e5265f03a6a8e1806e1b463b00c006b365e149d4'
fadc3ee16 resolve conflicts
614b3117c Merge pull request #3440 from ESMCI/fischer/aq_scam
328e3872a Merge pull request #3392 from ESMCI/mvertens/new_component_directories3
a93ced5eb need to explicitly state compiler used
bf09ad8e8 minor change to get FFLAGS
20856d803 Merge pull request #3431 from jedwards4b/complete_cprnc_fix
7fd3daebc Merge pull request #3430 from ESMCI/jgfouca/sharedlib_bld_serialization
e75142fae Merge pull request #3424 from ESMCI/cprnc_build_machine
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_pio.xml
M config/e3sm/config_files.xml
M config/ufs/config_files.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
M config/ufs/machines/template.chgres.run
M config/ufs/machines/template.gfs_post.run
M doc/README
D doc/source/_static
A doc/source/_static/pop_ver.js
A doc/source/_templates/footer.html
A doc/source/_templates/layout.html
M doc/source/conf.py
M scripts/lib/CIME/SystemTests/pre.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/buildlib.py
M scripts/lib/CIME/case/case_setup.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/test_scheduler.py
M scripts/tests/CMakeLists.txt
M scripts/tests/scripts_regression_tests.py
M src/build_scripts/buildlib.cprnc
D src/components/data_comps/datm/doc/bookinfo.xml
D src/components/data_comps/datm/doc/datacomps.xml
D src/components/data_comps/datm/doc/intro.xml
D src/components/data_comps/datm/doc/rundocbook.csh
D src/components/data_comps/datm/doc/streams.xml
D src/components/data_comps/datm/doc/ug.xml
D src/components/data_comps/docn/tools/pop_som_frc/SOM.pdf
D src/components/data_comps/dwav/bld/README
R100 src/components/data_comps/datm/cime_config/buildlib src/components/data_comps_mct/datm/cime_config/buildlib
R100 src/components/data_comps/datm/cime_config/buildnml src/components/data_comps_mct/datm/cime_config/buildnml
R100 src/components/data_comps/datm/cime_config/config_archive.xml src/components/data_comps_mct/datm/cime_config/config_archive.xml
R100 src/components/data_comps/datm/cime_config/config_component.xml src/components/data_comps_mct/datm/cime_config/config_component.xml
R100 src/components/data_comps/datm/cime_config/namelist_definition_datm.xml src/components/data_comps_mct/datm/cime_config/namelist_definition_datm.xml
R100 src/components/data_comps/datm/cime_config/user_nl_datm src/components/data_comps_mct/datm/cime_config/user_nl_datm
R100 src/components/data_comps/datm/mct/atm_comp_mct.F90 src/components/data_comps_mct/datm/src/atm_comp_mct.F90
R100 src/components/data_comps/datm/mct/datm_comp_mod.F90 src/components/data_comps_mct/datm/src/datm_comp_mod.F90
R100 src/components/data_comps/datm/mct/datm_shr_mod.F90 src/components/data_comps_mct/datm/src/datm_shr_mod.F90
R100 src/components/data_comps/desp/cime_config/buildlib src/components/data_comps_mct/desp/cime_config/buildlib
R099 src/components/data_comps/desp/cime_config/buildnml src/components/data_comps_mct/desp/cime_config/buildnml
R100 src/components/data_comps/desp/cime_config/config_component.xml src/components/data_comps_mct/desp/cime_config/config_component.xml
R100 src/components/data_comps/desp/cime_config/namelist_definition_desp.xml src/components/data_comps_mct/desp/cime_config/namelist_definition_desp.xml
R100 src/components/data_comps/desp/cime_config/user_nl_desp src/components/data_comps_mct/desp/cime_config/user_nl_desp
R100 src/components/data_comps/desp/desp_comp_mod.F90 src/components/data_comps_mct/desp/desp_comp_mod.F90
R100 src/components/data_comps/desp/esp_utils.F90 src/components/data_comps_mct/desp/esp_utils.F90
R100 src/components/data_comps/desp/mct/esp_comp_mct.F90 src/components/data_comps_mct/desp/src/esp_comp_mct.F90
R100 src/components/data_comps/dice/cime_config/buildlib src/components/data_comps_mct/dice/cime_config/buildlib
R100 src/components/data_comps/dice/cime_config/buildnml src/components/data_comps_mct/dice/cime_config/buildnml
R100 src/components/data_comps/dice/cime_config/config_archive.xml src/components/data_comps_mct/dice/cime_config/config_archive.xml
R100 src/components/data_comps/dice/cime_config/config_component.xml src/components/data_comps_mct/dice/cime_config/config_component.xml
R100 src/components/data_comps/dice/cime_config/namelist_definition_dice.xml src/components/data_comps_mct/dice/cime_config/namelist_definition_dice.xml
R100 src/components/data_comps/dice/cime_config/user_nl_dice src/components/data_comps_mct/dice/cime_config/user_nl_dice
R100 src/components/data_comps/dice/mct/dice_comp_mod.F90 src/components/data_comps_mct/dice/src/dice_comp_mod.F90
R100 src/components/data_comps/dice/mct/dice_flux_atmice_mod.F90 src/components/data_comps_mct/dice/src/dice_flux_atmice_mod.F90
R100 src/components/data_comps/dice/mct/dice_shr_mod.F90 src/components/data_comps_mct/dice/src/dice_shr_mod.F90
R100 src/components/data_comps/dice/mct/ice_comp_mct.F90 src/components/data_comps_mct/dice/src/ice_comp_mct.F90
R100 src/components/data_comps/dlnd/cime_config/buildlib src/components/data_comps_mct/dlnd/cime_config/buildlib
R100 src/components/data_comps/dlnd/cime_config/buildnml src/components/data_comps_mct/dlnd/cime_config/buildnml
R100 src/components/data_comps/dlnd/cime_config/config_archive.xml src/components/data_comps_mct/dlnd/cime_config/config_archive.xml
R100 src/components/data_comps/dlnd/cime_config/config_component.xml src/components/data_comps_mct/dlnd/cime_config/config_component.xml
R100 src/components/data_comps/dlnd/cime_config/namelist_definition_dlnd.xml src/components/data_comps_mct/dlnd/cime_config/namelist_definition_dlnd.xml
R100 src/components/data_comps/dlnd/cime_config/user_nl_dlnd src/components/data_comps_mct/dlnd/cime_config/user_nl_dlnd
R100 src/components/data_comps/dlnd/mct/dlnd_comp_mod.F90 src/components/data_comps_mct/dlnd/src/dlnd_comp_mod.F90
R100 src/components/data_comps/dlnd/mct/dlnd_shr_mod.F90 src/components/data_comps_mct/dlnd/src/dlnd_shr_mod.F90
R100 src/components/data_comps/dlnd/mct/lnd_comp_mct.F90 src/components/data_comps_mct/dlnd/src/lnd_comp_mct.F90
R100 src/components/data_comps/docn/cime_config/buildlib src/components/data_comps_mct/docn/cime_config/buildlib
R100 src/components/data_comps/docn/cime_config/buildnml src/components/data_comps_mct/docn/cime_config/buildnml
R100 src/components/data_comps/docn/cime_config/config_archive.xml src/components/data_comps_mct/docn/cime_config/config_archive.xml
R100 src/components/data_comps/docn/cime_config/config_component.xml src/components/data_comps_mct/docn/cime_config/config_component.xml
R100 src/components/data_comps/docn/cime_config/namelist_definition_docn.xml src/components/data_comps_mct/docn/cime_config/namelist_definition_docn.xml
R100 src/components/data_comps/docn/cime_config/user_nl_docn src/components/data_comps_mct/docn/cime_config/user_nl_docn
R099 src/components/data_comps/docn/mct/docn_comp_mod.F90 src/components/data_comps_mct/docn/src/docn_comp_mod.F90
R100 src/components/data_comps/docn/mct/docn_shr_mod.F90 src/components/data_comps_mct/docn/src/docn_shr_mod.F90
R100 src/components/data_comps/docn/mct/ocn_comp_mct.F90 src/components/data_comps_mct/docn/src/ocn_comp_mct.F90
R100 src/components/data_comps/docn/tools/pop_som_frc/README src/components/data_comps_mct/docn/tools/pop_som_frc/README
R100 src/components/data_comps/docn/tools/pop_som_frc/SOM.doc src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.doc
R100 src/components/data_comps/datm/doc/SOM.pdf src/components/data_comps_mct/docn/tools/pop_som_frc/SOM.pdf
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc.csh src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc.csh
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlann.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlann.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_frc_mlt.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_frc_mlt.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/pop_interp.ncl src/components/data_comps_mct/docn/tools/pop_som_frc/pop_interp.ncl
R100 src/components/data_comps/docn/tools/pop_som_frc/read_from_mss.csh src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss.csh
R100 src/components/data_comps/docn/tools/pop_som_frc/read_from_mss_month.csh src/components/data_comps_mct/docn/tools/pop_som_frc/read_from_mss_month.csh
R100 src/components/data_comps/drof/cime_config/buildlib src/components/data_comps_mct/drof/cime_config/buildlib
R100 src/components/data_comps/drof/cime_config/buildnml src/components/data_comps_mct/drof/cime_config/buildnml
R100 src/components/data_comps/drof/cime_config/config_archive.xml src/components/data_comps_mct/drof/cime_config/config_archive.xml
R100 src/components/data_comps/drof/cime_config/config_component.xml src/components/data_comps_mct/drof/cime_config/config_component.xml
R100 src/components/data_comps/drof/cime_config/namelist_definition_drof.xml src/components/data_comps_mct/drof/cime_config/namelist_definition_drof.xml
R100 src/components/data_comps/drof/cime_config/user_nl_drof src/components/data_comps_mct/drof/cime_config/user_nl_drof
R100 src/components/data_comps/drof/mct/drof_comp_mod.F90 src/components/data_comps_mct/drof/src/drof_comp_mod.F90
R100 src/components/data_comps/drof/mct/drof_shr_mod.F90 src/components/data_comps_mct/drof/src/drof_shr_mod.F90
R100 src/components/data_comps/drof/mct/rof_comp_mct.F90 src/components/data_comps_mct/drof/src/rof_comp_mct.F90
R100 src/components/data_comps/dwav/README src/components/data_comps_mct/dwav/README
R100 src/components/data_comps/dwav/cime_config/buildlib src/components/data_comps_mct/dwav/cime_config/buildlib
R100 src/components/data_comps/dwav/cime_config/buildnml src/components/data_comps_mct/dwav/cime_config/buildnml
R100 src/components/data_comps/dwav/cime_config/config_archive.xml src/components/data_comps_mct/dwav/cime_config/config_archive.xml
R100 src/components/data_comps/dwav/cime_config/config_component.xml src/components/data_comps_mct/dwav/cime_config/config_component.xml
R100 src/components/data_comps/dwav/cime_config/namelist_definition_dwav.xml src/components/data_comps_mct/dwav/cime_config/namelist_definition_dwav.xml
R100 src/components/data_comps/dwav/cime_config/user_nl_dwav src/components/data_comps_mct/dwav/cime_config/user_nl_dwav
R100 src/components/data_comps/dwav/mct/dwav_comp_mod.F90 src/components/data_comps_mct/dwav/src/dwav_comp_mod.F90
R100 src/components/data_comps/dwav/mct/dwav_shr_mod.F90 src/components/data_comps_mct/dwav/src/dwav_shr_mod.F90
R100 src/components/data_comps/dwav/mct/wav_comp_mct.F90 src/components/data_comps_mct/dwav/src/wav_comp_mct.F90
R100 src/components/stub_comps/satm/cime_config/buildlib src/components/data_comps_nuopc/datm/cime_config/buildlib
A src/components/data_comps_nuopc/datm/cime_config/buildnml
A src/components/data_comps_nuopc/datm/cime_config/config_archive.xml
A src/components/data_comps_nuopc/datm/cime_config/config_component.xml
A src/components/data_comps_nuopc/datm/cime_config/namelist_definition_datm.xml
A src/components/data_comps_nuopc/datm/cime_config/user_nl_datm
R099 src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90 src/components/data_comps_nuopc/datm/src/atm_comp_nuopc.F90
R099 src/components/data_comps/datm/nuopc/datm_comp_mod.F90 src/components/data_comps_nuopc/datm/src/datm_comp_mod.F90
R100 src/components/stub_comps/sesp/cime_config/buildlib src/components/data_comps_nuopc/dice/cime_config/buildlib
A src/components/data_comps_nuopc/dice/cime_config/buildnml
A src/components/data_comps_nuopc/dice/cime_config/config_archive.xml
A src/components/data_comps_nuopc/dice/cime_config/config_component.xml
A src/components/data_comps_nuopc/dice/cime_config/namelist_definition_dice.xml
A src/components/data_comps_nuopc/dice/cime_config/user_nl_dice
R097 src/components/data_comps/dice/nuopc/dice_comp_mod.F90 src/components/data_comps_nuopc/dice/src/dice_comp_mod.F90
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======================================================================
======================================================================
Originator: Chris Fischer
Date: 2-27-2020
Tag: cime5.8.16
Answer Changes: None
tests: scripts_regression_tests, aux_cam using fv3, various hand tests.
Dependencies:
Brief Summary:
- Add SE grids for CAM.
- Improved cprnc build process.
- FV3 port to CAM.
- Fix izumi submit.
- maint-5.6 branch merge(2020-02-20).
- Fix the -n parameter to mpirun in chgres workflow template.
- Initial port of CIME to Hera for the UFS MR Weather App.
- Add rpath for netcdf.
- Update laramie modules.
- Fix typo.
- Fix pylint issue.
- Add ic_filepath to config_inputdata.
- Change homebrew to macos.
- Non-netcdf files should not be compared with cprnc.
- Fix an issue in downloading inputdata.
- Update cheyenne build.
- More updates of macros.
- Update macros.
- Strictly ufs updates.
- Fix for post-processing to work with netcdf files.
- Fix auto-triage.
- Add D0 to all namelist values added in PR 3231 and 3251.
- Revert "Update nuopc esmf".
- More fixes for UFS release.
- Put MAX_MPITASKS_PER_NODE back to config_workflow.xml.
- Fix chgres issue on cheyenne.
- Update for UFS model.
- Allow writing T-forcing cplhist files even when running with SGLC.
- Update nuopc esmf.
- Fix misspelling in comment.
- Fix issue with resubmit on systems that use ssh.
- Move orbital updates to nuopc caps and update nuopc dmodels.
- Latest developments from the CIME_MODEL=ufs project.
- Fix issue when input_ic_root is None.
- Fix misleading output casestatus.
- More work related with UFS.
- Update description for FORCE_BUILD_SMP.
- Revert "update esmf and netcdf on cheyenne".
- Remove redundant logic in _get_extension.
- Pop hist dd fix.
- Homebrew build fix.
- Cheyenne machine updates.
- Correction in get_model().
- Update ufs config_files.
- Implement automatic test traiging in e3sm test infrastructure.
- Rename fv3gfs to ufsatm.
- Extend archiving support to accept a regex pattern as well as a cesm style file extension.
- Updates needed to get aux_clm tests working with CMEPS.
- Add trouble shooting doc.
- Updates input directory for UFS application.
- Changes to build fv3gfs standalone using cime.
- Support new inputdata for ufs model.
- Fixed Empty .cesm_proj file results in a crash.
- Improve scripts_regression_tests test cleanup.
User interface changes:
PR summary: git log --oneline --first-parent [previous_tag]..master
b2e292597 Merge pull request #3420 from ESMCI/fischer/segrids
5f75c600f Merge pull request #3400 from ESMCI/wpcoomb/improve_cprnc_build_process
f6395d42d Merge pull request #3415 from jtruesdal/fv3port
894562c87 Merge pull request #3413 from jedwards4b/fix_izumi_submit
1d406ebfa Merge pull request #3409 from ESMCI/fischer/m_maint5.6
a1ee2a564 Merge pull request #3405 from ESMCI/rsdunlapiv/chgres_mpirun_fix
d7d30df71 Merge pull request #3407 from ESMCI/rsdunlapiv/heraport2
3b42be3f0 Merge pull request #3406 from jedwards4b/mac_build_fix
1f64cbe2a Merge pull request #3402 from ESMCI/laramie_update
2a8bbd8e5 fix typo
7fe3af99b fix pylint issue
8884e2acf Merge pull request #3398 from jedwards4b/ufs_autodownload
39ce78718 change homebrew to macos
3835a137c Merge pull request #3397 from jedwards4b/dont_compare_nonnetcdf_hists
3399dd0be Merge pull request #3395 from jedwards4b/fix_issue_in_download
ae6b1a267 update cheyenne build for compatibility
e11de4814 more updates for macos
0c262b64b updates for macos
7339b0b66 strictly ufs updates
5b59975cf fix for post-processing to work with netcdf files
b5c3ca048 Merge pull request #3388 from ESMCI/jgfouca/fix_auto_triage
4c26f56e6 Merge pull request #3383 from cacraigucar/add_namelist_double
e8e9f655a Merge pull request #3386 from ESMCI/revert-3377-update_nuopc_esmf
e3b71c2f3 Merge pull request #3384 from ESMCI/uturuncoglu/ufs_release
5fe1b20e2 put MAX_MPITASKS_PER_NODE back to config_workflow.xml
846d089d8 fix chgres issue on cheyenne
f09afb134 Merge pull request #3379 from ESMCI/ufs_release
ce075935d Merge pull request #3358 from billsacks/t_forcing_cplhist_with_sglc_master
6cfcb072d Merge pull request #3377 from jedwards4b/update_nuopc_esmf
0d7fc13ab Fix misspelling in comment
307d4bb4a Merge pull request #3375 from jedwards4b/ssh_resubmit_fix
4de404425 Merge pull request #3373 from ESMCI/mvertens/update_nuopc_dmodels
d3624d963 Merge pull request #3371 from ESMCI/ufs_release
44673e0b8 fix issue when input_ic_root is None
8b8b1df5a Merge pull request #3354 from ESMCI/wpcoomb/fix_misleading_output_casestatus
bd4525df7 Merge pull request #3353 from ESMCI/ufs_release
e6ddef63f Merge pull request #3351 from ESMCI/jgfouca/update_force_build_smp_desc
5c32f2315 Merge pull request #3350 from ESMCI/revert-3343-cheyenne_machine_updates
27fd20a50 Merge pull request #3348 from billsacks/cleanup_extension_dd_match
d261fea15 Merge pull request #3346 from jedwards4b/pop_hist_dd_fix
207d1ab7d Merge pull request #3345 from jedwards4b/homebrew_build_fix
27b6d3405 Merge pull request #3343 from jedwards4b/cheyenne_machine_updates
b373a0240 correction in get_model()
2fd32ebef update ufs config_files
6d5b5ba84 Merge pull request #3340 from ESMCI/jgfouca/cime_auto_triage
5a35958e2 Merge pull request #3337 from jedwards4b/rename_fv3gfs_ufsatm
047f4ffbf Merge pull request #3326 from jedwards4b/archive_extensions
2f3876d4d Merge pull request #3335 from ESMCI/mvertens/updates_for_nuopc_regional
33ad6e314 Merge pull request #3332 from billsacks/doc_troubleshooting
00cfb7ed9 Merge pull request #3327 from jedwards4b/ufs_release_3
d13f34f15 Merge pull request #3322 from jedwards4b/fv3gfs_cime_build2
93931a0ec Merge pull request #3323 from jedwards4b/ufs_inputdata
c00ce8ff4 Merge pull request #3319 from ESMCI/wpcoomb/fix_empty_.cesm_proj_crash
2a7d36454 Merge pull request #3317 from ESMCI/jgfouca/better_regr_test_cleanup
Modified files: git diff --name-status [previous_tag]
M config/cesm/config_archive.xml
M config/cesm/config_files.xml
M config/cesm/config_grids.xml
M config/cesm/config_grids_common.xml
M config/cesm/config_grids_mct.xml
M config/cesm/machines/config_batch.xml
M config/cesm/machines/config_compilers.xml
M config/cesm/machines/config_machines.xml
M config/cesm/machines/config_workflow.xml
M config/cesm/machines/cylc_suite.rc.template
M config/ufs/config_files.xml
M config/ufs/config_grids.xml
D config/ufs/config_grids_common.xml
D config/ufs/config_grids_mct.xml
D config/ufs/config_grids_nuopc.xml
M config/ufs/config_inputdata.xml
M config/ufs/machines/config_batch.xml
M config/ufs/machines/config_compilers.xml
M config/ufs/machines/config_machines.xml
M config/ufs/machines/config_workflow.xml
A config/ufs/machines/template.chgres.run
A config/ufs/machines/template.gfs_post.run
M config/xml_schemas/config_compilers_v2.xsd
M config/xml_schemas/config_inputdata.xsd
M config/xml_schemas/config_workflow.xsd
M config/xml_schemas/testlist.xsd
M doc/source/users_guide/troubleshooting.rst
M scripts/Tools/Makefile
M scripts/Tools/archive_metadata
M scripts/Tools/bless_test_results
M scripts/Tools/component_compare_copy
M scripts/Tools/jenkins_generic_job
M scripts/Tools/jenkins_script
M scripts/Tools/wait_for_tests
M scripts/create_test
M scripts/lib/CIME/Servers/ftp.py
M scripts/lib/CIME/Servers/wget.py
M scripts/lib/CIME/SystemTests/mvk.py
M scripts/lib/CIME/SystemTests/system_tests_common.py
M scripts/lib/CIME/SystemTests/tsc.py
M scripts/lib/CIME/XML/archive.py
M scripts/lib/CIME/XML/archive_base.py
M scripts/lib/CIME/XML/env_archive.py
M scripts/lib/CIME/XML/env_batch.py
M scripts/lib/CIME/XML/env_workflow.py
M scripts/lib/CIME/XML/inputdata.py
M scripts/lib/CIME/XML/testlist.py
M scripts/lib/CIME/bless_test_results.py
M scripts/lib/CIME/build.py
M scripts/lib/CIME/case/case.py
M scripts/lib/CIME/case/case_run.py
M scripts/lib/CIME/case/case_st_archive.py
M scripts/lib/CIME/case/case_submit.py
M scripts/lib/CIME/case/check_input_data.py
M scripts/lib/CIME/case/preview_namelists.py
M scripts/lib/CIME/code_checker.py
M scripts/lib/CIME/get_timing.py
M scripts/lib/CIME/hist_utils.py
M scripts/lib/CIME/nmlgen.py
M scripts/lib/CIME/provenance.py
M scripts/lib/CIME/test_scheduler.py
M scripts/lib/CIME/utils.py
M scripts/lib/CIME/wait_for_tests.py
M scripts/lib/jenkins_generic_job.py
M scripts/query_config
M scripts/tests/scripts_regression_tests.py
A src/build_scripts/buildlib.cprnc
M src/components/data_comps/datm/cime_config/config_component.xml
M src/components/data_comps/datm/cime_config/namelist_definition_datm.xml
M src/components/data_comps/datm/nuopc/atm_comp_nuopc.F90
M src/components/data_comps/datm/nuopc/datm_comp_mod.F90
D src/components/data_comps/datm/nuopc/datm_shr_mod.F90
M src/components/data_comps/dice/nuopc/dice_comp_mod.F90
M src/components/data_comps/dice/nuopc/dice_flux_atmice_mod.F90
D src/components/data_comps/dice/nuopc/dice_shr_mod.F90
M src/components/data_comps/dice/nuopc/ice_comp_nuopc.F90
M src/components/data_comps/dlnd/nuopc/dlnd_comp_mod.F90
D src/components/data_comps/dlnd/nuopc/dlnd_shr_mod.F90
M src/components/data_comps/dlnd/nuopc/lnd_comp_nuopc.F90
M src/components/data_comps/docn/mct/docn_comp_mod.F90