Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Multithreading can lead to dropped reads #681

Closed
mr-c opened this issue Dec 8, 2014 · 1 comment
Closed

Multithreading can lead to dropped reads #681

mr-c opened this issue Dec 8, 2014 · 1 comment

Comments

@mr-c
Copy link
Contributor

mr-c commented Dec 8, 2014

As reported by @camillescott in #641

"For larger files (50000+ reads), ReadParser does not deliver all reads with multiple threads"

The workaround is to turn off threading.

The SeqAn replacement does not have this problem #642

This bug goes back many versions of khmer.

@mr-c
Copy link
Contributor Author

mr-c commented Dec 17, 2014

This was fixed by #642

@mr-c mr-c closed this as completed Dec 17, 2014
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Projects
None yet
Development

No branches or pull requests

1 participant