A "HMMReport" object represents the results of a Hmmer program search on a dataset with a hidden Markov model protein profile (see this section <report-implementation>). This object has methods to extract and filter Hmmer raw outputs (see generated output files <hmmer-outputs-label>), and then build Hits relevant for system detection. For matches selected with the filtering parameters, "Hit" objects (macsypy.HMMReport.Hit) are built.
macsypy.report.HMMReport
macsypy.report.GeneralHMMReport
macsypy.report.OrderedHMMReport
macsypy.report.GembaseHMMReport