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PANTHER:PTN000473190 endopeptidase activity #2240

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hattrill opened this issue Jan 18, 2019 · 7 comments
Closed

PANTHER:PTN000473190 endopeptidase activity #2240

hattrill opened this issue Jan 18, 2019 · 7 comments
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@hattrill
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Nicastrin PANTHER:PTN000473190 endopeptidase activity is a subunit of the gamma secretase complex that cleaves Notch receptor and APP, but it is the presenilin subunit that has the activity.

@hattrill
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@ukemi you might want to look at the annotations to MGI:1891700

@ukemi ukemi self-assigned this Jan 18, 2019
@ukemi
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ukemi commented Jan 18, 2019

Changed to contributes_to.

@ukemi ukemi closed this as completed Jan 18, 2019
@ValWood
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ValWood commented Jan 19, 2019

Out of curiosity, will the PAINT annotation then automagically update?

@hattrill
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I am not sure that it will get updated automatically. I am re-opening until we have a confirmation from PAINT.
I will note now, that I don't think that PAINT should propagate "contributes_to" as this qualifier has acknowledged issues with consistency of use. Ditto of coloc_with. Propagating them just amplifies the issue.

@hattrill hattrill reopened this Jan 21, 2019
@pgaudet
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pgaudet commented Mar 13, 2019

Removed annotation. (we can do 'contributes_to in PAINT but I prefer not to).

@pgaudet pgaudet closed this as completed Mar 13, 2019
@ValWood
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ValWood commented Mar 13, 2019

I wouldn't annotate this with contribute_to anyway, since the endonuclease subunit is clearly identifiable We only use this qualifier for "emergent function of a complex"

@pgaudet
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pgaudet commented Mar 13, 2019

Right

@pgaudet pgaudet self-assigned this Mar 14, 2019
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