Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

owltools verify-changes seems to reporting false positive changes #13118

Closed
cmungall opened this issue Mar 2, 2017 · 0 comments
Closed

owltools verify-changes seems to reporting false positive changes #13118

cmungall opened this issue Mar 2, 2017 · 0 comments
Assignees
@cmungall
Labels
Infrastructure

Comments

@cmungall
Copy link
Member

cmungall commented Mar 2, 2017

now:

OWLTOOLS_MEMORY=8G owltools --use-catalog go-edit.obo --verify-changes -p go-lastrelease.owl -o change-report.txt --id-prefix-filter GO: --check-missing-labels && touch change-report.txt
...
2017-03-02 10:36:12,323 INFO  (CommandRunner:5163) Start verifying changes.
2017-03-02 10:36:15,819 INFO  (CommandRunner:5242) Verification finished.
2017-03-02 10:36:15,820 ERROR (CommandRunner:5249) The verification failed with the following errors.
2017-03-02 10:36:15,820 ERROR (CommandRunner:5256) Missing ID: GO:0102537
2017-03-02 10:36:15,820 ERROR (CommandRunner:5256) Missing ID: GO:0102544
2017-03-02 10:36:15,820 ERROR (CommandRunner:5256) Missing ID: GO:0102560
2017-03-02 10:36:15,820 ERROR (CommandRunner:5256) Missing ID: GO:0102561
2017-03-02 10:36:15,820 ERROR (CommandRunner:5256) Missing ID: GO:0102571
2017-03-02 10:36:15,821 ERROR (CommandRunner:5256) Missing ID: GO:0102594
@cmungall cmungall self-assigned this Mar 2, 2017
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Assignees

@cmungall cmungall

Labels
Infrastructure
Projects
None yet
Milestone
No milestone
Development

No branches or pull requests
2 participants
@cmungall @pgaudet