Obsoletion request GO:0018266 GPI anchor biosynthetic process via N-aspartyl-glycosylphosphatidylinositolethanolamine AND SIBLINGS

[ValWood]

Please provide as much information as you can:

• GO term ID and Label

GO:0018266 GPI anchor biosynthetic process via N-aspartyl-glycosylphosphatidylinositolethanolamine
GO:0018267 GPI anchor biosynthetic process via N-cysteinyl-glycosylphosphatidylinositolethanolamine
GO:0018265 GPI anchor biosynthetic process via N-asparaginyl-glycosylphosphatidylinositolethanolamine
GO:0018268 GPI anchor biosynthetic process via N-glycyl-glycosylphosphatidylinositolethanolamine
GO:0018269 GPI anchor biosynthetic process via N-seryl-glycosylphosphatidylinositolethanolamine
GO:0018270 GPI anchor biosynthetic process via N-alanyl-glycosylphosphatidylinositolethanolamine
GO:0050493 GPI anchor biosynthetic process via N-threonyl-glycosylphosphatidylinositolethanolamine

• The reason for obsoletion is that this term represents a molecular function.

• "Replace by" term (ID and label)
  If all annotations can safely be moved to that term

GO:0006506 GPI anchor biosynthetic process

• Are there annotations to this term?

• How many EXP:
  There are no annotations or mappings to these terms

• Are there mappings and cross references to this term? (InterPro, Keywords; check QuickGO cross-references section)

• Any other information

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Checklist for ontology editor

Check term usage and metadata in Protégé

• check term usage in the ontology
• check internal mappings: RHEA, EC, MetaCyc
• check subset usage
• check taxon constraints

Check annotations

• create Annotation Review spreadsheet
• • Annotation Review template: https://docs.google.com/spreadsheets/d/1izV3q1jnq_Ybg5MJ53O_b5BCTkGtjl_Fi-cOg3-7eBE/edit#gid=0
• • Instructions: https://wiki.geneontology.org/Annotation_Review_Request
• create annotation review ticket: https://github.com/geneontology/go-annotation/issues/new?assignees=&labels=annotation+review&template=annotation-review-for-obsoletion.md&title=Review+annotations+to+%5BINSERT+GO+TERM%5D
• find external mappings (via IEAS), include in obsoletion notice
• tag curators in Annotation Review ticket. Responsible annotator for each group: https://github.com/geneontology/go-site/blob/master/metadata/group-contacts.csv

Notification

• create obsoletion announcement
• announce to GO friends (go-friends@mailman.stanford.edu)
• paste the text in the ontology ticket

[ValWood]

These terms are not needed to curate GPI anchor biosynthesis
http://noctua.geneontology.org/workbench/noctua-visual-pathway-editor/?model_id=gomodel%3A665912ed00000192

[ValWood]

@pgaudet do you agree with this? They appear to MF term? This is a linear highly conserv ed pathway.

[ValWood]

These are definitely single steps. I'll go ahead with this on Monday

[pgaudet]

Hi @ValWood , yes I agree with these obsoletions. Moreover it seems these have not been used for annotations.

Thanks, Pascale