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New rules for annotating Protein Complexes #1056
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I found this page: Should we update this? |
Sure, please do ! It dates form 2015. |
New annotation rules and annotation reviews required: More details in mtg minutes: General notes:
General actions:
1. Guidelines for annotation: GP1 part_of complex:
2. [GP1] | “x complex binding”
Usage of GO:0044877 protein-containing complex binding (as of 18/4/19) – incl all children:
Annotation review:
3. colocalizes_with:
Usage of colocalizes_with GO:0032991 protein-containing complex (as of 18/4/19) – incl children:
Annotation review:
PROTEIN-CONTAINING COMPLEX BINDING: Usage of GO:0044877 protein-containing complex binding (as of 18/4/19) – exact term:
4. IPI: GP1-Cpx1 or Cpx2-Cpx3: GP1 | protein-containing complex binding | IPI | with/from "CP AC for Cpx1" has_direct_input "CP AC of Cpx1"
5. IPI: GP1-[GP2 part_of Cpx1]: GP1 | protein-containing complex binding | IPI | with/from "UniProt/MOD AC of GP2 " has_direct_input "CP AC of Cpx1"
Annotation review (pts 4 & 5):
6. ISS/ISO: GP1(sp2) | protein-containing complex binding | ISS/ISO | with/from "GP1(sp1)” has_direct_input "CP AC Cpx1(sp2)"
Annotation review:
Note:
Other evidence codes used but not yet discussed: 7. 291 IDA annotations:
If IDA use is valid:
Annotation review:
8. 13 IMP annotations:
Annotation review:
9. 1 IC annotation:
Annotation review:
10. 1 TAS annotation:
Annotation review:
I hope that's all. Please discuss! Birgit |
Noting from conversation with @pgaudet and @dougli1sqrd , we are currently holding on further action here. |
From the 2019-04 GOC meeting in Cambridge, these are new proposed rules for annotation to Protein Complex binding:
(NOTE: CP : Complex portal)
** NB: The complex AC goes in the AE because the AE extends the term and contains the physiological partner of the GP [optional].
** NB: “complex” can be replaced with other types of GPs or list of GPs
** CP will provide “rapid curation” ACs in future → request via YELLOW BUTTON on CP homepage (manually change resource from IntAct to CP)
@bmeldal and @pgaudet to formalize these rules
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