Use inter-ontology relations to link manual annotations

[vanaukenk]

The basic idea here is that when a relationship exists between terms in the ontology, e.g. MF part_of BP, then if there are manual annotations to both (and either no extensions or extensions are all the same), then those annotations could be connected during the import.

We need some illustrative examples here, so holding off on adding this to the to-do list just yet.

[ukemi]

For example from these lines in the GPAD file:

MGI	MGI:95522	enables	GO:0005007	MGI:MGI:79015|PMID:2161540	ECO:0000314		20091002	MGI

MGI	MGI:95522	acts_upstream_of_or_within	GO:0008543	MGI:MGI:79015|PMID:2161540	ECO:0000316	UniProtKB:P09038	20160510	MGI

MGI	MGI:95522	enables	GO:0017134	MGI:MGI:79015|PMID:2161540	ECO:0000314			20160512	MGI

We would get the construct at the far left of the model:gomodel:bfa1a7ae-0c5e-418b-a172-e5d1773414f2 because fibroblast growth factor-activated receptor activity is part_of fibroblast growth factor receptor signaling pathway and has_part some fibroblast growth factor binding. The last relation between functions would have no evidence at this point in time.