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Add cwltool requirement InlineJavascriptRequirement #1051

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jasonwalker80 opened this issue Oct 15, 2021 · 1 comment
Open

Add cwltool requirement InlineJavascriptRequirement #1051

jasonwalker80 opened this issue Oct 15, 2021 · 1 comment

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@jasonwalker80
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In the requirements, we need to add InlineJavascriptRequirement. This line causes cwltool to fail:

analysis-workflows/definitions/pipelines/somatic_exome.cwl

Line 555 in 43c790e

valueFrom: |

@tmooney
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tmooney commented Oct 15, 2021

A similar issue exists in https://github.com/genome/analysis-workflows/blob/98fd710ff8b032efadeebf85563f4515f1864d40/definitions/subworkflows/cram_to_cnvkit.cwl We should check for other places using this construction, too!

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@tmooney @jasonwalker80