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add padding to germline exome target region intervals #995

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apaul7 opened this issue Jan 26, 2021 · 1 comment
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add padding to germline exome target region intervals #995

apaul7 opened this issue Jan 26, 2021 · 1 comment
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@apaul7
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apaul7 commented Jan 26, 2021

PR #925 added a wingspan to the target region for the somatic pipelines. The same should be done for the germline exome pipeline.
This will help complete all of issue #924
changes:

  • add target_interval_padding input to pipeline
  • create step to add padding to input target_regions interval list file
  • pass that newly created interval list file to detect_variants subworkflow as limit_variant_intervals
  • add documentation!
@apaul7 apaul7 added this to the 2.0 milestone Jan 26, 2021
@apaul7 apaul7 mentioned this issue May 5, 2021
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@apaul7 apaul7 self-assigned this May 5, 2021
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Resolved in #1028

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