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Find and re-locate legacy software/data hiding out under /gsc/. #1560

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tmooney opened this issue Sep 12, 2016 · 3 comments
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Find and re-locate legacy software/data hiding out under /gsc/. #1560

tmooney opened this issue Sep 12, 2016 · 3 comments

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@tmooney
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tmooney commented Sep 12, 2016 •
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The end goal is to remove the dependency on /gsc/ as a special directory for the GMS.

  • Some software/versions might be old enough we don't need them any more.
  • Some will probably need to be incorporated into our Docker image somehow (maybe in a local /gsc/ directory?)
@jasonwalker80
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@tmooney is this complete?

@tmooney
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tmooney commented Dec 5, 2016

Not really... some progress has been made, but there are many yet-to-be-resolved cases like samtools that are using the sw Genome::Config location.

@jasonwalker80 jasonwalker80 mentioned this issue Mar 5, 2020
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@jasonwalker80
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Closing. This is replaced by #1969

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@tmooney @jasonwalker80