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| # starbeast2-tutorial | ||
| --- | ||
| author: Huw A. Ogilvie | ||
| level: Intermediate | ||
| title: Calibrated Species Trees | ||
| subtitle: Estimating species divergence times using StarBEAST2 | ||
| beastversion: 2.5.0 | ||
| --- | ||
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| # Background | ||
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| This tutorial walks through through how to set up a calibrated species tree | ||
| analysis in StarBEAST2. It follows on from **Species Trees with Relaxed | ||
| Molecular Clocks**, which should be attempted first. Calibrated species trees | ||
| enable researchers to estimate divergence times for pairs of species, crown | ||
| and stem groups, *et cetera*. |
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| \DeclareCiteCommand{\cite} | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{cite}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand*{\cite} | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{citeyear}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand{\parencite}[\mkbibparens] | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{cite}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand*{\parencite}[\mkbibparens] | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{citeyear}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand{\footcite}[\mkbibfootnote] | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{ \usebibmacro{cite}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand{\footcitetext}[\mkbibfootnotetext] | ||
| {\usebibmacro{prenote}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{cite}}} | ||
| {\multicitedelim} | ||
| {\usebibmacro{postnote}} | ||
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| \DeclareCiteCommand{\textcite} | ||
| {\boolfalse{cbx:parens}} | ||
| {\usebibmacro{citeindex}% | ||
| \printtext[bibhyperref]{\usebibmacro{textcite}}} | ||
| {\ifbool{cbx:parens} | ||
| {\bibcloseparen\global\boolfalse{cbx:parens}} | ||
| {}% | ||
| \multicitedelim} | ||
| {\usebibmacro{textcite:postnote}} | ||
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| \newcommand{\citep}{\parencite} | ||
| \newcommand{\citet}{\textcite} | ||
| \defbibheading{relevref}[\refname]{\section*{Relevant References}} | ||
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| \renewcommand{\postnotedelim}{\iffieldpages{postnote}{\addcolon}{\addcomma\space}} | ||
| \DeclareFieldFormat{postnote}{#1} | ||
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| \DeclareFieldFormat[article, inbook, incollection, inproceedings, patent, thesis, unpublished]{title}{#1} | ||
| \DeclareFieldFormat[article, inbook, incollection, inproceedings, patent, thesis, unpublished]{journaltitle}{\mkbibemph{#1}\nopunct} | ||
| \DeclareFieldFormat[article, inbook, incollection, inproceedings, patent, thesis, unpublished]{volume}{{#1}\addcolon} %puts volume number in parens | ||
| %\DeclareFieldFormat[article, inbook, incollection, inproceedings, patent, thesis, unpublished]{year}{\mkbibparens{#1}\nopunct} %puts year in parens | ||
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| \DeclareFieldFormat[article, incollection, patent, thesis, unpublished]{pages}{{\nopp#1}} | ||
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| \DeclareFieldFormat{sentencecase}{\MakeSentenceCase{#1}} | ||
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| \renewbibmacro*{title}{% | ||
| \ifthenelse{\iffieldundef{title}\AND\iffieldundef{subtitle}} | ||
| {} | ||
| {\ifthenelse{\ifentrytype{article}\OR\ifentrytype{inbook}% | ||
| \OR\ifentrytype{incollection}\OR\ifentrytype{inproceedings}% | ||
| \OR\ifentrytype{inreference}} | ||
| {\printtext[title]{% | ||
| \printfield[sentencecase]{title}% | ||
| \setunit{\subtitlepunct}% | ||
| \printfield[sentencecase]{subtitle}}}% | ||
| {\printtext[title]{% | ||
| \printfield[titlecase]{title}% | ||
| \setunit{\subtitlepunct}% | ||
| \printfield[titlecase]{subtitle}}}% | ||
| \newunit}% | ||
| \printfield{titleaddon}} | ||
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| \DefineBibliographyStrings{english}{% various adjustments to common bib entry strings | ||
| urlseen = {Accessed:},% What goes in front of the date a URL was accessed/retrieved etc. | ||
| editor = {(Ed)},%Ed – no dot, in brackets | ||
| editors = {(Eds)},% Eds – no dot, in brackets | ||
| byeditor = {(Ed.)}}% ‘Edited by’ for edited works | ||
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| \DeclareNameAlias{default}{last-first} | ||
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| \renewbibmacro{in:}{} | ||
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| \renewbibmacro{publisher+location+date}{ | ||
| \iflistundef{publisher} | ||
| {} | ||
| {\printlist{publisher}% | ||
| {\addcomma\space}% | ||
| \iflistundef{location} | ||
| {} | ||
| {\printlist{location}}% | ||
| } | ||
| } | ||
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| \DeclareBibliographyDriver{article}{% | ||
| \usebibmacro{bibindex}% | ||
| \usebibmacro{begentry}% | ||
| \usebibmacro{author/translator+others}% | ||
| \newunit\newblock | ||
| \printfield{year}% | ||
| \setunit{\labelnamepunct}\newblock | ||
| \usebibmacro{title}% | ||
| \newunit | ||
| \printlist{language}% | ||
| \newunit\newblock | ||
| \usebibmacro{byauthor}% | ||
| \newunit\newblock | ||
| \usebibmacro{bytranslator+others}% | ||
| \newunit\newblock | ||
| \printfield{version}% | ||
| \newunit\newblock | ||
| %\usebibmacro{in:}% %mit in: | ||
| \usebibmacro{journal}% | ||
| \newunit\newblock | ||
| \printfield{volume}% | ||
| \newunit\newblock | ||
| \usebibmacro{byeditor+others}% | ||
| \newunit\newblock | ||
| \usebibmacro{note+pages}% | ||
| \newunit\newblock | ||
| \iftoggle{bbx:isbn} | ||
| {}% | ||
| \newunit\newblock | ||
| \usebibmacro{doi+eprint+url}% | ||
| \newunit\newblock | ||
| \usebibmacro{addendum+pubstate}% | ||
| \newunit\newblock | ||
| \usebibmacro{pageref}% | ||
| \usebibmacro{finentry}} | ||
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| \DeclareBibliographyDriver{inproceedings}{% | ||
| \usebibmacro{bibindex}% | ||
| \usebibmacro{begentry}% | ||
| \usebibmacro{author/translator+others}% | ||
| \newunit\newblock | ||
| \printfield{year}% | ||
| \setunit{\labelnamepunct}\newblock | ||
| \usebibmacro{title}% | ||
| \newunit | ||
| \printlist{language}% | ||
| \newunit\newblock | ||
| \usebibmacro{byauthor}% | ||
| \newunit\newblock | ||
| \usebibmacro{bytranslator+others}% | ||
| \newunit\newblock | ||
| \printfield{version}% | ||
| \newunit\newblock | ||
| %\usebibmacro{in:}% %mit in: | ||
| \usebibmacro{booktitle}% | ||
| \newunit\newblock | ||
| \printfield{volume}% | ||
| \newunit\newblock | ||
| \usebibmacro{byeditor+others}% | ||
| \newunit\newblock | ||
| \usebibmacro{publisher+location+date}% | ||
| \newunit\newblock | ||
| \usebibmacro{note+pages}% | ||
| \newunit\newblock | ||
| \usebibmacro{pageref}% | ||
| \usebibmacro{finentry}} | ||
|
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||
| \DeclareBibliographyDriver{book}{% | ||
| \usebibmacro{bibindex}% | ||
| \usebibmacro{begentry}% | ||
| \usebibmacro{author/translator+others}% | ||
| \newunit\newblock | ||
| \printfield{year}% | ||
| \setunit{\labelnamepunct}\newblock | ||
| \usebibmacro{title}% | ||
| \newunit | ||
| \printlist{language}% | ||
| \newunit\newblock | ||
| \usebibmacro{byauthor}% | ||
| \newunit\newblock | ||
| \usebibmacro{bytranslator+others}% | ||
| \newunit\newblock | ||
| %\usebibmacro{in:}% %mit in: | ||
| \usebibmacro{booktitle}% | ||
| \newunit\newblock | ||
| \printfield{volume}% | ||
| \newunit\newblock | ||
| \usebibmacro{publisher+location+date}% | ||
| \newunit\newblock | ||
| \usebibmacro{note+pages}% | ||
| \newunit\newblock | ||
| \usebibmacro{pageref}% | ||
| \usebibmacro{finentry}} | ||
|
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| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,32 @@ | ||
| >Canis_adustus_a DQ240291.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_adustus_b DQ240291.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_anthus_a DQ240292.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaatgggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_anthus_b DQ240292.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaatgggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_latrans_a DQ240293.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_latrans_b DQ240293.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaatgggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_lupus_a DQ240294.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaatgggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_lupus_b DQ240294.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaatgggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagttggagagtgtg | ||
| >Canis_mesomelas_a DQ240295.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcaaattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattattttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttggaagagtg | ||
| >Canis_mesomelas_b DQ240295.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcaaattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattattttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttggaagagtg | ||
| >Canis_simensis_a DQ240296.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgatggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg | ||
| >Canis_simensis_b DQ240296.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgatggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg | ||
| >Cuon_alpinus_a DQ240299.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccagaatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttggcagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg | ||
| >Cuon_alpinus_b DQ240299.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcgacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccagaatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttggcagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgactcgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg | ||
| >Lycaon_pictus_a DQ240300.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcaacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgacttgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg | ||
| >Lycaon_pictus_b DQ240300.1 | ||
| gagaaaaatcagatcaaagtcagctgggaagaagaggcagtatctaaactactaacctctctcaaagacaatgtgcccaaggccacaggggccctttatgactatgctaacaagtaccaccaggagcacacaggactcaacctgacggatgcttcttcaaaactgagaagaagtctgcagaacagcgctgactgggcctatcacagtgtcttggagaagattgataaggcagatttagggttccagagcatagccaaaggtaccactagaacctaccagcagtggaaggacaaggcccaggatctgtaccaagaaatgttattagctcacagagaccaaggtgatttccagggactccagaaagacatgtttgacagattaataggagttactcaagaatacaaagtcacagtcagtcatcagattgacttgttgattgatttcctgaagttcactaaattccagcttccaggaaaacctgggacatacactaaagatgaactctgcactatggtcatgaaagaagtagggcaggtgctgtcccaggtatattcaaaaatctatagtgggttcgaaatattgttttcctatttccaagacctgatggagaaatctgaattaatcaaggacctagagattaaaatcccttttgattcaaagagctataaactaatagatgtaatcttggagtttgggagagtg |
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