Fix GitHub workflow docker builds (#80) #1
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| name: Build and publish docker images on push to master | |
| on: | |
| push: | |
| branches: | |
| - "master" | |
| jobs: | |
| docker-image-push-illumina: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Get commit hash | |
| id: commit | |
| uses: prompt/actions-commit-hash@v2 | |
| - name: Build and push Illumina | |
| id: docker_build | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: ./ | |
| file: ./environments/illumina/Dockerfile | |
| push: true | |
| tags: "genomicmedicinesweden/gms-artic-illumina:${{steps.commit.outputs.short}}, genomicmedicinesweden/gms-artic-illumina:latest" | |
| docker-image-push-nanopore: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out repo | |
| uses: actions/checkout@v3 | |
| - name: Login to Docker Hub | |
| uses: docker/login-action@v2 | |
| with: | |
| username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| password: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| - name: Set up Docker Buildx | |
| id: buildx | |
| uses: docker/setup-buildx-action@v2 | |
| - name: Get commit hash | |
| id: commit | |
| uses: prompt/actions-commit-hash@v2 | |
| - name: Build and push Nanopore | |
| id: docker_build | |
| uses: docker/build-push-action@v3 | |
| with: | |
| context: ./ | |
| file: ./environments/nanopore/Dockerfile | |
| push: true | |
| tags: "genomicmedicinesweden/gms-artic-nanopore:${{steps.commit.outputs.short}}, genomicmedicinesweden/gms-artic-nanopore:latest" |