nanopore container splits

[JD2112]

The purpose of the code changes are as follows:

[x] nanopore container splits into nanopolish and medaka
[x] fixed issues with nanopolish, added numpy (1.21.0) and tensorflow (1.14.0)
[x] medaka version updated to 1.7.2
[x] --medaka-model added to medaka workflow.
[x] README updated
[ ] needs container updated on gms-Dockerhub.

Standard test procedure

• The self-test mentioned in the README finished successfully
• Produced files contain expected values
• The code has been reviewed by @octocat

This version is a:

• MAJOR - when you make incompatible API changes
• MINOR - when you add functionality in a backwards compatible manner
• PATCH - when you make backwards compatible bug fixes or documentation/instructions

[sylvinite]

Structure looks sound.
Not test running it. So anything related to that is outside the scope of the approval.

[JD2112]

Structure looks sound. Not test running it. So anything related to that is outside the scope of the approval.

@sylvinite Thanks, true. I don't think it will pass the test run, since I don't know the meadka-model for the test dataset provided in nanopore data folder. Second, new docker containers need to push to gms-dockerhub. Shall I do it manually?

[sylvinite]

If you need to push extra images to dockerhub, feel free to. The more the merrier ;)