Fix query fasta that is not compressed when asked

genotoul-bioinfo · Mar 30, 2022 · c606965 · c606965
1 parent 1629fa6
commit c606965
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Showing 4 changed files with 4 additions and 3 deletions.
diff --git a/CHANGELOG.md b/CHANGELOG.md
@@ -9,6 +9,7 @@
 ### Bugfix
 
 - Fix some Jinja2 requirement constraints
+- Fix exported query fasta file that was not compressed when asked.
 
 ## 1.3.0 (2022-03-01)
 

diff --git a/src/dgenies/lib/functions.py b/src/dgenies/lib/functions.py
@@ -179,7 +179,7 @@ def compress(filename):
                 while os.path.exists(compressed):
                     compressed = "%s/%d_%s" % (file_path, n, basename)
                     n += 1
-                with open(filename, "rb") as infile, xopen(compressed, "wb") as outfile:
+                with open(filename, "rb") as infile, xopen(compressed, mode="wb", format="gz") as outfile:
                     shutil.copyfileobj(infile, outfile)
                 os.remove(filename)
                 return compressed

diff --git a/src/dgenies/static/js/dgenies.result.export.js b/src/dgenies/static/js/dgenies.result.export.js
@@ -125,7 +125,7 @@ dgenies.result.export.ask_export_fasta = function () {
             .css("margin", "12px 12px 20px 0");
         let body = $("<p>");
         body.append(icon);
-        body.append("Compression is recommanded on slow connections. Download Gzip file?");
+        body.append("Compression is recommended on slow connections. Download Gzip file?");
         dialog.append(body);
         dialog.dialog({
             resizable: false,

diff --git a/src/dgenies/static/js/dgenies.result.min.js b/src/dgenies/static/js/dgenies.result.min.js