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sci-physics/root: version bump
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Version bump in 5.32 and 5.34 branches.
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bircoph committed Oct 19, 2012
1 parent 93c0ec0 commit ad450b5
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12 changes: 12 additions & 0 deletions sci-physics/root/ChangeLog
Expand Up @@ -2,6 +2,18 @@
# Copyright 1999-2012 Gentoo Foundation; Distributed under the GPL v2
# $Header: /var/cvsroot/gentoo-x86/sci-physics/root/ChangeLog,v 1.96 2012/03/29 18:21:49 bicatali Exp $

*root-5.34.02 (19 Oct 2012)
*root-5.32.04 (19 Oct 2012)

19 Oct 2012; Andrew Savchenko <bircoph@gmail.com>
+files/root-5.28.00b-asneeded.patch,
+files/root-5.28.00b-nobyte-compile.patch,
+files/root-5.28.00h-explicit-functions.patch,
+files/root-5.32.00-dotfont.patch,
+files/root-5.32.00-explicit-functions.patch, +root-5.32.04.ebuild,
+files/root-5.34.01-glibc216.patch, +root-5.34.02.ebuild:
Version bump for 5.32.04 and 5.34.02 patch releases.

23 Jul 2012; Andrew Savchenko <bircoph@gmail.com>
-files/root-5.28.00b-asneeded.patch, -files/root-5.32.00-dotfont.patch:
Update User's Guide. Remove old.
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3 changes: 3 additions & 0 deletions sci-physics/root/Manifest
@@ -1,6 +1,9 @@
DIST ROOTUsersGuide-5.34.02.pdf 9137216 SHA256 b69908af895804e824470078fa32974974a492d8e5db81c2f4b67c68b091c98d SHA512 874316975b28a820badd3c116238005870d4bf559b0c86349293ee9bdc2d0fedc763658ff5f03b8ef4565ecbee9a014de55472c126c4b94b97cb3b103b9c5968 WHIRLPOOL ffc66e18396334e44566be1609177b9e9dab5ea7c72be0ac0ec1fb9aea528a53ce3a8be397ada15e805a43d8edc2293e5f1b1ef551ed3dc2a1619fdf0227e4f0
DIST ROOTUsersGuide.pdf 9124822 SHA256 70a96c4a2573dc0d320142f86993ecfda24caa755e910340a3014120f2997c8b SHA512 c3b4c18ef2e13968afdf67c6003249d4cfe6ea661fa32ce25127361bae7e3376a25cd3b11591292f3975bcd8105291aca52f2f6214c9fe45f4bd6e7e44d54b25 WHIRLPOOL 11256ba7837d17e5795cf71ac32db43d7d8f797bfbddf5f71612fe2f8fb2e01354372c0ea8f0bc22868881eb0bfdc8a3e3f1b05293d2750d293aa4d59217b2e6
DIST RooFit_Users_Manual_2.91-33.pdf 1330062 SHA256 101c4e4c41962238fcabf1caa86cafc51241a1800594491b2e62ef8b565a5646 SHA512 732d7dea3541b51e5f0b9b5b70dae57e1bdbb2504c4222d5e5095ec0f9b67307011c1f31c2c95be419b53dd8426f52f62f6c9370084208176a2ed3d7f25d783b WHIRLPOOL 033897bef4bdb13246a81ea6749f7895e6c4d639752e932130234ad9153bb399a4e5d416237850da27f139d3cccc53d9adb7a077abf20d257ce057157d6c3696
DIST TMVAUsersGuide-v4.03.pdf 3913533 SHA256 0cdbb4a2d19eb7a86e2911cfa73a905932e862d6c94be10b7662a9355b0241af SHA512 d8bb2ce35ef32c4877059898f56513db0b1057924e21935a3d3a6f114748e167984c43fd2ec7e54197fccff875540543968fea9a8e75bf63f5f13521724a7ddb WHIRLPOOL 0a3e2e61e8e32f3a22757178adf033f9fbb89014aecd4df7f8bd49677d772bb3ad2c0f5526259611879f6bb20df647c01e23f53ade483d7a3e2242f8aee6c6aa
DIST info.png 2060 SHA256 51de6661250f3fb71c6c8250cbc4bdc4dc4283cc90240b4dc1ee6168e8d40279 SHA512 81a730eefbe7a7e15d5840491402c7644bf7ed5d5f8f3830ed9457b343cc7882480e993ea84aef93500742cd0fe8469859cd2c925e5582b91ef56406804ae276 WHIRLPOOL 02ea6daf9e3d21947ebf5dd01c455a13f2fcbf9981be34a150056a3510122ca49e3d137d4f242c7218d4d06ace09566d513a04f09071723ac244f5a38e982bac
DIST root-banner.png 132555 SHA256 d165e1cc175f654ff79af39193a6144678f600e14a53dd20e2b216b3e8951e94 SHA512 139347f396e88c8062d847d612949204cb80e551a826d926950ca8ab967f0d496487fed17a227fc796ae4db23fca758d91a0af7943142adbed358e98d7667b1f WHIRLPOOL dd23e26acf9303b404cda8135d6946af3b1abba3dfdff8d80e56096f810d50a01ebfb52dc1e6ee1d1b99fbb5859dc850e0e368155339b5007294d95ce8909857
DIST root_v5.32.04.source.tar.gz 55526502 SHA256 0c0130ba3d74b86caee3071deeceb46545cfde34def8ad2107601e133506acf2 SHA512 796d7f6fe92700232da3fcaac042438e13c13e504179a7375105b2ff06e1fac571ef4d59f270d73844b2a481b0762a873985d22eee2b1a0b156071b777d4417a WHIRLPOOL c5ce0f81331e08b3f79e97c894bff60185bba562388e789d3d1716d3523045a55c24e1cebded4ad19a09023c4b5275fd7d44acb726a1f248a9616ed95addd609
DIST root_v5.34.02.source.tar.gz 56243895 SHA256 401ae3b69a397e0ab557faf640a13f49f8aab41dc03b4e7ebddbe37be32fedb1 SHA512 3f8da0e78e2be7a3961b97e6da0bc6957f74c51f4356a273a996a081b6ec9ce62311d89bd3aa3bbfcd3a7e47ea8324ebc6565eae40b72a9c85aa7a7c7b18fd79 WHIRLPOOL 1ca36f02a7f060f946b5c5a578fe8edf710da5bbc257dacd6dbbf513c95738e73da58915acb90322f38094a383b9cf34f24ea17f982da6ae8069abe25ab96cac
DIST rootdrawing-logo.png 15051 SHA256 1dfd913cad53a3ebd6bf560d14df918cab5a295cc7d155944a8e27284af83a6b SHA512 14aa13ebfed3c9412d7d7d04c250740b25fe3af6bcb07e618045a5cec2dc23698a251fd7df2db1a6c37331084db99b029b387ea81c25ac825fc7ae10ad164a68 WHIRLPOOL 877a959a5aead73ba69dbb805c9869cbd6a047ea476bd4e7fef80781563a61d20dad49dd4d8b0005bfc58e8f7c7d38efbb3e085a95974feb81dfc9e339c18741
20 changes: 20 additions & 0 deletions sci-physics/root/files/root-5.28.00b-asneeded.patch
@@ -0,0 +1,20 @@
--- root.orig/configure 2010-12-20 07:17:54.000000000 +0000
+++ root/configure 2010-12-20 07:16:05.000000000 +0000
@@ -709,7 +709,7 @@
cat <<EOF > conftest.mk
include ${ac_srcdir}/config/Makefile.${arch}
conftest: conftest.c
- \$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@
+ \$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib -o \$@

conftest.c:
echo "int main() { return 0; }" > \$@
@@ -723,7 +723,7 @@
cat <<EOF > conftest.mk
include ${ac_srcdir}/config/Makefile.${arch}
conftest:conftest.c
- \$(CC) \$(CFLAGS) \$(LDFLAGS) $linkdir $linklib \$< -o \$@
+ \$(CC) \$(CFLAGS) \$(LDFLAGS) \$< $linkdir $linklib -o \$@

conftest.c:
echo "extern int $linksymbol (); " > \$@
138 changes: 138 additions & 0 deletions sci-physics/root/files/root-5.28.00b-nobyte-compile.patch
@@ -0,0 +1,138 @@
diff -Naur root.orig/Makefile root/Makefile
--- root.orig/Makefile 2010-12-17 22:48:40.577775091 +0300
+++ root/Makefile 2010-12-17 22:49:27.902497903 +0300
@@ -1148,10 +1148,7 @@
if test "x$(RFLX_GRFLXPY)" != "x"; then \
rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPY); \
fi; \
- if test "x$(RFLX_GRFLXPYC)" != "x"; then \
- rm -f $(DESTDIR)$(LIBDIR)/$(RFLX_GRFLXPYC); \
- fi; \
- if test "x$(RFLX_GRFLXPY)$(RFLX_GRFLXPYC)" != "x"; then \
+ if test "x$(RFLX_GRFLXPY)" != "x"; then \
dir=$(RFLX_GRFLXDD:lib/=); \
while test "x$${dir}" != "x" && \
test -d $(DESTDIR)$(LIBDIR)/$${dir} && \
diff -Naur root.orig/bindings/pyroot/Module.mk root/bindings/pyroot/Module.mk
--- root.orig/bindings/pyroot/Module.mk 2010-12-17 22:48:39.941179413 +0300
+++ root/bindings/pyroot/Module.mk 2010-12-17 22:49:27.899164943 +0300
@@ -48,8 +48,6 @@
ROOTPY := $(subst $(MODDIR),$(LPATH),$(ROOTPYS))
$(LPATH)/%.py: $(MODDIR)/%.py; cp $< $@
endif
-ROOTPYC := $(ROOTPY:.py=.pyc)
-ROOTPYO := $(ROOTPY:.py=.pyo)

# used in the main Makefile
ALLHDRS += $(patsubst $(MODDIRI)/%.h,include/%.h,$(PYROOTH))
@@ -68,10 +66,8 @@
include/%.h: $(PYROOTDIRI)/%.h
cp $< $@

-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )'
-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )'

-$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) $(ROOTPYC) $(ROOTPYO) \
+$(PYROOTLIB): $(PYROOTO) $(PYROOTDO) $(ROOTPY) \
$(ROOTLIBSDEP) $(PYTHONLIBDEP)
@$(MAKELIB) $(PLATFORM) $(LD) "$(LDFLAGS)" \
"$(SOFLAGS)" libPyROOT.$(SOEXT) $@ \
@@ -113,7 +109,7 @@

distclean-$(MODNAME): clean-$(MODNAME)
@rm -f $(PYROOTDEP) $(PYROOTDS) $(PYROOTDH) $(PYROOTLIB) \
- $(ROOTPY) $(ROOTPYC) $(ROOTPYO) $(PYROOTMAP) \
+ $(ROOTPY) $(PYROOTMAP) \
$(PYROOTPYD) $(PYTHON64DEP) $(PYTHON64)

distclean:: distclean-$(MODNAME)
diff -Naur root.orig/build/package/debian/rules root/build/package/debian/rules
--- root.orig/build/package/debian/rules 2010-12-17 22:48:40.197817461 +0300
+++ root/build/package/debian/rules 2010-12-17 22:49:27.902497903 +0300
@@ -623,10 +623,6 @@
-X$(SYSCONFDIR)/root/system.rootauthrc \
-X$(SYSCONFDIR)/root/system.rootdaemonrc \
-X$(PREFIX)/lib/root/$(SOVERS)/libAfterImage.a \
- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyc \
- -X$(PREFIX)/lib/root/$(SOVERS)/PyCintex.pyo \
- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyc \
- -X$(PREFIX)/lib/root/$(SOVERS)/ROOT.pyo
# $(foreach i, \
# $(wildcard $(DTMP)/$(PREFIX)/lib/root/lib*.so.$(SOVERS)), \
# -X$(i:$(DTMP)/%=%) )
diff -Naur root.orig/cint/cintex/Module.mk root/cint/cintex/Module.mk
--- root.orig/cint/cintex/Module.mk 2010-12-17 22:48:40.057833071 +0300
+++ root/cint/cintex/Module.mk 2010-12-17 22:49:27.902497903 +0300
@@ -31,10 +31,6 @@
CINTEXPY := $(subst $(MODDIR)/python,$(LPATH),$(CINTEXPYS))
$(LPATH)/%.py: $(MODDIR)/python/%.py; cp $< $@
endif
-ifneq ($(BUILDPYTHON),no)
-CINTEXPYC := $(CINTEXPY:.py=.pyc)
-CINTEXPYO := $(CINTEXPY:.py=.pyo)
-endif

# used in the main Makefile
ALLHDRS += $(patsubst $(MODDIRI)/Cintex/%.h,include/Cintex/%.h,$(CINTEXH))
@@ -86,8 +82,6 @@
fi)
cp $< $@

-%.pyc: %.py; python -c 'import py_compile; py_compile.compile( "$<" )'
-%.pyo: %.py; python -O -c 'import py_compile; py_compile.compile( "$<" )'

$(CINTEXLIB): $(CINTEXO) $(CINTEXPY) $(CINTEXPYC) $(CINTEXPYO) \
$(ORDER_) $(subst $(CINTEXLIB),,$(MAINLIBS)) $(CINTEXLIBDEP)
diff -Naur root.orig/cint/reflex/Module.mk root/cint/reflex/Module.mk
--- root.orig/cint/reflex/Module.mk 2010-12-17 22:48:40.037835301 +0300
+++ root/cint/reflex/Module.mk 2010-12-17 22:51:36.871451359 +0300
@@ -48,9 +48,6 @@
RFLX_GRFLXS := $(wildcard $(RFLX_GRFLXSD)/*.py)
RFLX_GRFLXPY := $(patsubst $(RFLX_GRFLXSD)/%.py,$(RFLX_GRFLXDD)/%.py,$(RFLX_GRFLXS))
RFLX_GRFLXPY += $(RFLX_GCCXMLPATHPY)
-ifneq ($(BUILDPYTHON),no)
-RFLX_GRFLXPYC := $(subst .py,.pyc,$(RFLX_GRFLXPY))
-endif

RFLX_LIBDIR = $(LIBDIR)

@@ -92,7 +89,7 @@

ALLEXECS += $(RFLX_GENMAPX)

-POSTBIN += $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
+POSTBIN += $(RFLX_GRFLXPY)

##### local rules #####
.PHONY: all-$(MODNAME) clean-$(MODNAME) distclean-$(MODNAME) \
@@ -122,8 +119,6 @@
mkdir -p lib/python/genreflex; fi )
cp $< $@

-$(RFLX_GRFLXDD)/%.pyc: $(RFLX_GRFLXDD)/%.py
- @python -c 'import py_compile; py_compile.compile( "$<" )'

$(RFLX_GENMAPO) : CXXFLAGS += -I$(REFLEXDIRS)/genmap

@@ -149,7 +144,7 @@
$(RLIBMAP) -o $@ -l $(REFLEXDICTLIB) \
-d $(REFLEXDICTLIBDEPM) -c $(REFLEXL)

-all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPYC) $(RFLX_GRFLXPY)
+all-$(MODNAME): $(REFLEXLIB) $(REFLEXDICTLIB) $(REFLEXDICTMAP) $(RFLX_GRFLXPY)

clean-genreflex:
@rm -rf lib/python/genreflex
diff -Naur root.orig/cint/reflex/python/CMakeLists.txt root/cint/reflex/python/CMakeLists.txt
--- root.orig/cint/reflex/python/CMakeLists.txt 2010-12-17 22:48:40.037835301 +0300
+++ root/cint/reflex/python/CMakeLists.txt 2010-12-17 22:49:27.902497903 +0300
@@ -15,7 +15,7 @@
##################### sources ####################

FILE(GLOB_RECURSE GENREFLEX_SRCS RELATIVE ${CMAKE_CURRENT_SOURCE_DIR} genreflex/*.py)
-SET(GENREFLEX_SCRIPT ${CMAKE_CURRENT_BINARY_DIR}/genreflex/genreflex.pyc PARENT_SCOPE)
+SET(GENREFLEX_SCRIPT PARENT_SCOPE)

##################### gccxmlpath ####################


12 changes: 12 additions & 0 deletions sci-physics/root/files/root-5.28.00h-explicit-functions.patch
@@ -0,0 +1,12 @@
--- root/io/io/Module.mk.orig 2011-11-24 20:12:56.000000000 +0400
+++ root/io/io/Module.mk 2012-03-09 03:45:42.850549826 +0400
@@ -67,9 +67,4 @@
distclean:: distclean-$(MODNAME)

##### extra rules ######
-#ifeq ($(GCC_VERS_FULL),gcc-4.4.0)
-ifeq ($(GCC_VERS),gcc-4.4)
-ifneq ($(filter -O%,$(OPT)),)
$(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION
-endif
-endif
58 changes: 58 additions & 0 deletions sci-physics/root/files/root-5.32.00-dotfont.patch
@@ -0,0 +1,58 @@
--- root/html/src/TClassDocOutput.cxx.orig 2012-05-25 16:18:10.000000000 +0400
+++ root/html/src/TClassDocOutput.cxx 2012-05-29 21:36:53.813593012 +0400
@@ -625,7 +625,7 @@
<< "size=\"8,10\";" << endl
<< "ratio=auto;" << endl
<< "margin=0;" << endl
- << "node [shape=plaintext,fontsize=40,width=4,height=0.75];" << endl
+ << "node [shape=plaintext,fontsize=40,width=4,height=0.75,fontname=\"DejaVu Serif\"];" << endl
<< "\"" << fCurrentClass->GetName() << "\" [shape=ellipse];" << endl;

std::stringstream ssDep;
@@ -704,7 +704,7 @@
outdot << ";" << endl;
} else if (writeAndMoreFor) {
outdot << " \"...andmore" << writeAndMoreFor->GetName()
- << "\" [label=\"...and more\",fontname=\"Times-Italic\",fillcolor=lightgrey,style=filled];" << endl;
+ << "\" [label=\"...and more\",fontname=\"DejaVu Serif Italic\",fillcolor=lightgrey,style=filled];" << endl;
}
}
if (!levelExists) break;
@@ -733,7 +733,7 @@
<< "ranksep=0.1;" << endl
<< "nodesep=0;" << endl
<< "margin=0;" << endl;
- outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10];" << endl;
+ outdot << " node [style=filled,width=0.7,height=0.15,fixedsize=true,shape=plaintext,fontsize=10,fontname=\"DejaVu Serif\"];" << endl;

std::stringstream ssDep;
const int numColumns = 3;
@@ -939,7 +939,7 @@
<< "ranksep=0;" << endl
<< "nodesep=0;" << endl
<< "size=\"8,10\";" << endl
- << "node [fontsize=20,shape=plaintext];" << endl;
+ << "node [fontsize=20,shape=plaintext,fontname=\"DejaVu Serif\"];" << endl;

for (std::list<std::string>::iterator iFile = listFilesToParse.begin();
iFile != listFilesToParse.end(); ++iFile) {
@@ -999,7 +999,8 @@
<< "ranksep=0.7;" << endl
<< "nodesep=0.3;" << endl
<< "size=\"8,8\";" << endl
- << "ratio=compress;" << endl;
+ << "ratio=compress;" << endl
+ << "node [fontname=\"DejaVu Serif\"];" << endl;

TString libs(fCurrentClass->GetSharedLibs());
outdot << "\"All Libraries\" [URL=\"LibraryDependencies.html\",shape=box,rank=max,fillcolor=lightgray,style=filled];" << endl;
@@ -1109,7 +1110,8 @@

dotout << "digraph G {" << endl
<< "ratio=auto;" << endl
- << "rankdir=RL;" << endl;
+ << "rankdir=RL;" << endl
+ << "node [fontname=\"DejaVu Serif\"];" << endl;

// loop on all classes
TClassDocInfo* cdi = 0;
18 changes: 18 additions & 0 deletions sci-physics/root/files/root-5.32.00-explicit-functions.patch
@@ -0,0 +1,18 @@
--- root/io/io/Module.mk.orig 2012-02-29 19:46:38.000000000 +0400
+++ root/io/io/Module.mk 2012-03-09 02:29:19.905665572 +0400
@@ -67,15 +67,5 @@
distclean:: distclean-$(MODNAME)

##### extra rules ######
-#ifeq ($(GCC_VERS_FULL),gcc-4.4.0)
-ifeq ($(GCC_VERS),gcc-4.4)
-ifneq ($(filter -O%,$(OPT)),)
$(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION
-endif
-endif
-ifeq ($(GCC_VERS),gcc-4.5)
-ifneq ($(filter -O%,$(OPT)),)
$(call stripsrc,$(IODIRS)/TStreamerInfoReadBuffer.o): CXXFLAGS += -DR__EXPLICIT_FUNCTION_INSTANTIATION
-endif
-endif
-
35 changes: 35 additions & 0 deletions sci-physics/root/files/root-5.34.01-glibc216.patch
@@ -0,0 +1,35 @@
diff -ur root-5.34.00.orig/build/rmkdepend/main.c root-5.34.00/build/rmkdepend/main.c
--- root-5.34.00.orig/build/rmkdepend/main.c 2012-06-05 15:31:46.000000000 +0200
+++ root-5.34.00/build/rmkdepend/main.c 2012-07-05 20:42:58.938953353 +0200
@@ -60,7 +60,7 @@
# endif
# elif defined(__CYGWIN__)
extern int fchmod(int, mode_t);
-#else
+# elif !defined(__GLIBC__) || __GLIBC__ < 2 || (__GLIBC__ == 2 && __GLIBC_MINOR__ < 16)
extern int fchmod(int, int);
# endif
#endif
diff -ur root-5.34.00.orig/cint/tool/rmkdepend/main.c root-5.34.00/cint/tool/rmkdepend/main.c
--- root-5.34.00.orig/cint/tool/rmkdepend/main.c 2012-06-05 15:31:30.000000000 +0200
+++ root-5.34.00/cint/tool/rmkdepend/main.c 2012-07-05 20:42:58.492949104 +0200
@@ -58,7 +58,7 @@
#if !defined(MAC_OS_X_VERSION_10_4)
extern int fchmod();
#endif
-#else
+#elif !defined(__GLIBC__) || __GLIBC__ < 2 || (__GLIBC__ == 2 && __GLIBC_MINOR__ < 16)
extern int fchmod();
#endif
#endif
diff -ur root-5.34.00.orig/core/unix/src/TUnixSystem.cxx root-5.34.00/core/unix/src/TUnixSystem.cxx
--- root-5.34.00.orig/core/unix/src/TUnixSystem.cxx 2012-06-05 15:31:17.000000000 +0200
+++ root-5.34.00/core/unix/src/TUnixSystem.cxx 2012-07-05 20:29:29.969242837 +0200
@@ -98,6 +98,7 @@
#include <pwd.h>
#include <grp.h>
#include <errno.h>
+#include <sys/resource.h>
#include <sys/wait.h>
#include <time.h>
#include <sys/time.h>
1 change: 1 addition & 0 deletions sci-physics/root/metadata.xml
Expand Up @@ -17,6 +17,7 @@
</longdescription>
<use>
<flag name="c++0x"> Build ROOT using the C++11 standard. Not supported, requires <pkg>sys-devel/gcc</pkg>&gt;=4.7.0</flag>
<flag name="clarens"> Build the Clarens and PEAC plug-ins, to use in a GRID enabled analysis</flag>
<flag name="fits">Support for images and data from FITS files with <pkg>sci-libs/cfitsio</pkg></flag>
<flag name="geocad">Enable ROOT-CAD interface using <pkg>sci-libs/opencascade</pkg></flag>
<flag name="htmldoc">Generate html documentation</flag>
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