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app-admin/eselect app-admin/eselect: Fix eselect patch Jun 21, 2018
app-benchmarks Update Manifests to new hashes Dec 10, 2017
app-doc app-doc/root-docs: removal due to migration of sci-physics/root Jul 6, 2018
app-forensics/vine Update Manifests to new hashes Dec 10, 2017
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app-vim/vim-gromacs Second try to clean spaces in metadata.xml Nov 18, 2017
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dev-java dev-java/netcdf: Fix deps Jun 21, 2018
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dev-perl dev-perl/Text-RecordParser: add missing dependency Dec 23, 2017
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sci-biology sci-biology/nilearn: fixed tests Aug 2, 2018
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sci-geosciences Update Manifests to new hashes Dec 10, 2017
sci-libs sci-libs/nipype: added testing dep Aug 10, 2018
sci-mathematics drop due to broken deps Jun 21, 2018
sci-misc sci-misc/praat: Clean old Jun 21, 2018
sci-physics sci-physics/root: in main tree Jul 6, 2018
sci-visualization sci-visualization/mricrogl: version bump Jun 5, 2018
scripts Use /usr/lib instead of /usr/lib64 Jan 1, 2015
sys-cluster sys-cluster/openmpi: bump 2.1.4 Aug 13, 2018
sys-devel/gdebugger Drop leftover from CVS in HEADER Feb 25, 2017
virtual Second try to clean spaces in metadata.xml Nov 18, 2017
x11-libs drop due to broken deps Jun 21, 2018
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.gitignore profiles: remove use.local.desc permanently Oct 16, 2017
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skel.metadata.xml Revert "Gentoo does https by default now" Jun 21, 2015

README.md

Gentoo Science Overlay

Build Status

This is a Gentoo Linux ebuild repository which provides numerous scientific software packages.

Install

As per the current Portage specifications, ebuild repositories (a.k.a. overlays) should be managed via file collections under /etc/portage/repos.conf/. To enable our overlay without the need for additional software, simply run (as root):

wget https://gitweb.gentoo.org/proj/sci.git/plain/metadata/science.conf -O /etc/portage/repos.conf/science

To start using the overlay you now only need to get the ebuilds, via emerge --sync.

Uninstall

To uninstall the overlay run (again, as root):

rm /etc/portage/repos.conf/science
rm -rf /var/lib/overlays/science

Support

You can ask for help on Freenode IRC in #gentoo-science. Alternatively you can report bugs bugs on the GitHub issues page.

Contribute

Please fork! We will merge! See our contributing guide.