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@josephkott josephkott released this 25 May 13:38
· 184 commits to master since this release
v1.6
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Learn about vigilant mode.

Added

  • New workflow for simulation of a big relatives dataset (~500k samples) was added. It's available via simbig command of the pipeline launcher.
  • Support multiple cores for the preprocessing (preprocess) workflow.
  • IBD segments weighting feature was added, see compute-weight-mask workflow and --weight-mask parameter of the pipeline launcher.
  • Several options for better control of the samples filtering were added: --missing-samples, --alt-hom-samples, --het-samples.
  • Random seed parameter was added for the Ped-sim simulation.

Changed

  • GRAPE flows were renamed in the pipeline launcnher: ibis_king -> ibis-king, germline -> germline-king.
  • readme.md and the GRAPE scheme were updated and actualized.
  • Singularity support was removed in favour of conda environments.
  • Code refactoring and clean up.

Fixed

  • Fixed germline-king simulation flow.
  • Fixed java command not found during the reference workflow evaluation.
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