Update GCHP deployment script to 12.3.2

scripts/build_environment/GCHP/deploy_GCHP.sh

@@ -1,14 +1,15 @@
 #!/bin/bash
 
-GC_VERSION="12.1.1"
-GCHP_VERSION="bugfix/GCHP_issues"  # Fix GCHP run-time problems. See https://github.com/geoschem/gchp/issues/6#issuecomment-447475255
+GC_VERSION="12.3.2"
+GCHP_VERSION="12.3.2"
+TOP_DIR="$HOME/gchp_12.3.2"
 
 # Input data directory, need to pull real data later
 mkdir -p $HOME/ExtData/HEMCO
 
 # Create tutorial folder for demo project
-mkdir ~/tutorial
-cd ~/tutorial
+mkdir $TOP_DIR
+cd $TOP_DIR
 
 # Source code
 git clone https://github.com/geoschem/geos-chem.git Code.GCHP
@@ -23,17 +24,19 @@ git checkout $GCHP_VERSION
 # generate run directory
 cd Run
 rm ${HOME}/.geoschem/config
-printf "$HOME/ExtData \n 2 \n 1 \n $HOME/tutorial \n gchp_standard \n n" | ./createRunDir.sh
+printf "$HOME/ExtData \n 2 \n 1 \n $TOP_DIR \n gchp_standard \n n" | ./createRunDir.sh
 
 # compile source code
-cd ~/tutorial/gchp_standard
-ln -sf ~/gchp.ubuntu.env gchp.env  # need to copy gchp.ubuntu.env to $HOME
-make compile_clean
+cd $TOP_DIR/gchp_standard
+ln -sf ~/gchp.env gchp.env  # need to put gchp.env to $HOME
+make build_all
 
 # modify run-time configurations
 
 # correctly link restart file
 ln -sf $HOME/ExtData/GEOSCHEM_RESTARTS/v2016-07/initial_GEOSChem_rst.c24_standard.nc  initial_GEOSChem_rst.c24_standard.nc
+ln -sf $HOME/ExtData/GEOSCHEM_RESTARTS/v2016-07/initial_GEOSChem_rst.c48_standard.nc  initial_GEOSChem_rst.c48_standard.nc
+ln -sf $HOME/ExtData/GEOSCHEM_RESTARTS/v2016-07/initial_GEOSChem_rst.c180_standard.nc  initial_GEOSChem_rst.c180_standard.nc
 
 # read low-resolution metfields to save space
 ln -sf $HOME/ExtData/GEOS_4x5/GEOS_FP MetDir 
@@ -42,9 +45,10 @@ sed -i -e 1,120s/025x03125.nc/4x5.nc/g ExtData.rc # only scan the first few line
 # hard to see why simulation crashes with default debug level 0
 # sed -i -e "s#DEBUG_LEVEL.*#DEBUG_LEVEL: 5#" CAP.rc
 
-# Turn off CEDS as GCHP 12.1.0 still reads the old, large file.
+# Turn off CEDS as GCHP 12.3.2 still reads the old, large file.
+# https://github.com/geoschem/gchp/issues/3
 sed -i -e "s#.--> CEDS.*# --> CEDS                   :       false#" HEMCO_Config.rc
-sed -i -e "s#.--> CEDS_SHIP.*# --> CEDS                   :       false#" HEMCO_Config.rc
+sed -i -e "s#.--> CEDS_SHIP.*# --> CEDS_SHIP              :       false#" HEMCO_Config.rc
 
 # Turn off StateMet diagnostics to prevent error in https://github.com/geoschem/gchp/issues/12
 sed -i -e "s/'StateMet_avg',/#'StateMet_avg',/" HISTORY.rc