Use pure sed instead of bash function

geoschem · Dec 6, 2018 · f5d9b5e · f5d9b5e
1 parent a6621f1
commit f5d9b5e
Showing 1 changed file with 22 additions and 22 deletions.
diff --git a/scripts/build_environment/GC-classic/deploy_GC.sh b/scripts/build_environment/GC-classic/deploy_GC.sh
@@ -22,23 +22,20 @@ git clone https://github.com/geoschem/geos-chem-unittest.git UT
 cd UT
 git checkout -b $UT_VERSION
 
-# change UT configurations
-modify_line () {
-# convenient function to change one line in a text file
-local key=$1  # unique pattern to locate a line
-local newline=$2  # newline as the replacement
-local file=$3
-# use '#' as delimiter so the line can contain '/' and ':'
-sed -i -e "s#.*${key}.*#${newline}#" $file
-}
+# Configure UT
 
-modify_line 'CODE_DIR    :=' ' CODE_DIR    :=$(HOME)/tutorial/Code.$(VERSION)' runs/shared_inputs/Makefiles/Makefile
+# Each sed command change one line in a text file
+# This could be trivially done by text editors by we want full automation
+# Use '#' as delimiter so the line can contain '/' and ':'
+# Use .* to match the rest of the line
+
+sed -i -e 's#CODE_DIR    :=.*#CODE_DIR    :=$(HOME)/tutorial/Code.$(VERSION)#' runs/shared_inputs/Makefiles/Makefile
 
 cd perl
-modify_line 'GCGRID_ROOT    :' '   GCGRID_ROOT    : /home/ubuntu' CopyRunDirs.input
-modify_line 'DATA_ROOT      :' '   DATA_ROOT      : {GCGRIDROOT}/ExtData' CopyRunDirs.input
-modify_line 'UNIT_TEST_ROOT :' '   UNIT_TEST_ROOT : {HOME}/tutorial/UT' CopyRunDirs.input
-modify_line 'COPY_PATH      :' '   COPY_PATH      : {HOME}/tutorial' CopyRunDirs.input
+sed -i -e 's#GCGRID_ROOT    :.*#GCGRID_ROOT    : /home/ubuntu#' CopyRunDirs.input
+sed -i -e 's#DATA_ROOT      :.*#DATA_ROOT      : {GCGRIDROOT}/ExtData#' CopyRunDirs.input
+sed -i -e 's#UNIT_TEST_ROOT :.*#UNIT_TEST_ROOT : {HOME}/tutorial/UT#' CopyRunDirs.input
+sed -i -e 's#COPY_PATH      :.*#COPY_PATH      : {HOME}/tutorial#' CopyRunDirs.input
 
 # show the modifications
 git add -A
@@ -49,17 +46,20 @@ git status -v
 
 # compile executable
 cd ~/tutorial/geosfp_4x5_standard
+mkdir OutputDir  # to host output data
 make -j4 mpbuild NC_DIAG=y BPCH_DIAG=n TIMERS=1
 
 # change run-time configuration for tutorial purpose
-modify_line 'End   YYYYMMDD' 'End   YYYYMMDD, hhmmss  : 20160701 002000' input.geos
-
-mkdir OutputDir
-modify_line "EXPID:  ./GEOSChem" "EXPID: ./OutputDir/GEOSChem" HISTORY.rc
+sed -i -e 's#End   YYYYMMDD.*#End   YYYYMMDD, hhmmss  : 20160701 002000#' input.geos
+sed -i -e 's#EXPID:  ./GEOSChem.*#EXPID: ./OutputDir/GEOSChem#' HISTORY.rc
+sed -i -e "s/#'SpeciesConc',/'SpeciesConc',/" HISTORY.rc
 modify_line "SpeciesConc'" "             'SpeciesConc'," HISTORY.rc # make sure this collection is uncommented
 
 # reduce output size for tutorial purpose
-modify_line "SpeciesConc.frequency" "  SpeciesConc.frequency:      00000000 002000" HISTORY.rc
-modify_line "SpeciesConc.duration" "  SpeciesConc.duration:       00000000 002000" HISTORY.rc
-modify_line "SpeciesConc.mode" "  SpeciesConc.mode:           'instantaneous'" HISTORY.rc
-modify_line "SpeciesConc.fields" "  SpeciesConc.fields:         'SpeciesConc_NO             ', 'GIGCchem',\n                              'SpeciesConc_CO             ', 'GIGCchem',\n                              'SpeciesConc_O3             ', 'GIGCchem'," HISTORY.rc
+sed -i -e 's#SpeciesConc.frequency.*#SpeciesConc.frequency:      00000000 002000#' HISTORY.rc
+sed -i -e 's#SpeciesConc.duration.*#SpeciesConc.duration:       00000000 002000#' HISTORY.rc
+sed -i -e "s#SpeciesConc.mode.*#SpeciesConc.mode:           'instantaneous'#" HISTORY.rc
+sed -i -e "s#SpeciesConc.fields.*#SpeciesConc.fields:         'SpeciesConc_NO             ', 'GIGCchem',\n                              'SpeciesConc_CO             ', 'GIGCchem',\n                              'SpeciesConc_O3             ', 'GIGCchem',#" HISTORY.rc
+
+# run the model
+./geos.mp