Added native versions of GEOS-FP as menu options in GCHP run directory creation

[LiamBindle]

This is a WIP. I'll add more in the coming days.

Things I need to check

• fullchem + native GEOS-FP
• fullchem + native GEOS-FP + mass fluxes
• fullchem + normal GEOS-FP
• fullchem + normal MERRA2

[LiamBindle]

This is ready to merge @msulprizio.

This adds "GEOS-FP native data" as an option to "Choose meteorology source:". If you select it, it also asks

Do you want to use mass fluxes for advection? (yes/no, default=no):
Do you want to use mass fluxes derived winds for advection? (yes/no, default=no):

The metfields for mass fluxes and mass flux derived winds are available here: http://geoschemdata.wustl.edu/ExtData/GEOS_C720/ (I'll add them to the input data catalogs once I've finished processing the backlog). FYI, @sdeastham.

Based on your response, it will initialize the run directory appropriately.

[msulprizio]

Looks good to me.

@lizziel Will this cause any conflicts with #1259? Any preference on the order of merging this PR and that one? Both can probably go into 14.0.0-alpha.5.

[msulprizio]

Upon further review and testing, I've found these updates break GCClassic run directory creation. I think this may be because of lines added to run/shared/settings/geosfp.txt and run/shared/settings/merra2.txt. We are therefore going to have to exclude this update from the 14.0.0 release candidate.

@LiamBindle Could you please test this with both GCClassic and GCHP and push any fixes? PRs should pass integration tests for both GCClassic and GCHP before merging.

[LiamBindle]

Sorry about that @msulprizio. I forgot to add an update to the copy of init_rd.sh. One of the updates was removing the sort command in ./createRunDir.sh so that multi-line template values can be used. After fixing that, I found RUNDIR_MET_DIR and RUNDIR_GRID_DIR were being defined in the wrong order but sort was happening to reorder them "correctly". Now that I removed the sort, I had to include the shared met settings (e.g., geosfp.txt) after the grid definition section.

I don't have the capability to run integration tests. Are you guys able to run that easily?

[LiamBindle]

I should note I confirmed there's no difference in GEOS-FP or GCAP2 run directories with GC-Classic between alpha.3 and after this update.

006f7fa should make it so the order of RUNDIR_ variables doesn't matter.

[msulprizio]

@LiamBindle Thanks for pushing those fixes. I tested on my end and this looks good to merge now.

[LiamBindle]

Thanks Melissa!