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Add correct TransportTracers species names to GCHP HISTORY.rc.TransportTracers template #1840

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merged 7 commits into from Jun 26, 2023

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yantosca
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Name and Institution (Required)

Name: Bob Yantosca
Institution: Harvard + GCST

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Describe the update

This is the companion PR to #1839. The GCHP HISTORY.rc.TransportTracers file had old names for the TransportTracers species and not the new names as of the 14.2.0-alpha.15 update. We have now updated the HISTORY.rc.TransportTracers file to contain the new TransportTracers species names. This should fix the problem noted in https://h

Expected changes

This will only affect the GCHP TransportTracers simulations. It should fix failing integration tests and TransportTracers simulations.

This PR can go into a patch version (such as the upcoming 14.2.1).

Reference(s)

N/A

Related Github Issue(s)

Closes #1839; Fixes geoschem/HEMCO#218

run/GCHP/HISTORY.rc.templates/HISTORY.rc.TransportTracers
- Replace old species names with the updated species names
  from the 14.2.0-alpha.15 update.  This was causing integration
  tests to fail (see geoschem/HEMCO PR #218).

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
@yantosca yantosca added category: Bug Something isn't working topic: GCHP Related to GCHP only topic: Configuration Files Related to GEOS-Chem configuration files labels Jun 21, 2023
@yantosca yantosca requested a review from msulprizio June 21, 2023 14:34
@yantosca yantosca self-assigned this Jun 21, 2023
CHANGELOG.md
- Added note about fixing the species names in the GCHP
  HISTORY.rc.TransportTracers template file.

Signed-off-by: Bob Yantosca <yantosca@seas.harvard.edu>
@msulprizio msulprizio changed the base branch from main to dev/14.2.0 June 22, 2023 13:48
@msulprizio msulprizio added this to the 14.2.0 milestone Jun 22, 2023
msulprizio and others added 5 commits June 22, 2023 10:11
The HEMCO_Config.rc and HEMCO_Diagn.rc files for both GCClassic and GCHP
still used the old TransportTracer species names. They have now been updated
to ensure emissions are properly saved out.

Other fixes in this commit include:
- Removing obsolete HTAP emissions entries from HEMCO_Config.rc
- Removing Emis* entries from HISTORY.rc.TransportTracers for species that
  do not have emissions
- Removing edits to CHANGELOG.md from previous commit since these bugs were
  introduced in 14.2.0.

Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Signed-off-by: Melissa Sulprizio <mpayer@seas.harvard.edu>
Updates in this commit allow GCHP to run to completion if using
the out-of-the-box transport tracer simulation. This includes no longer
requiring all species to be present in the restart file as well as a few
bug fixes in config file ExtData.rc.

Signed-off-by: Lizzie Lundgren <elundgren@seas.harvard.edu>
@msulprizio
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All GCClassic (except TOMAS) and GCHP integration tests are passing for this pull request. Good to merge.

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category: Bug Something isn't working topic: Configuration Files Related to GEOS-Chem configuration files topic: GCHP Related to GCHP only
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HISTORY.rc.TransportTracers in 14.2.0-alpha.15 still uses old transport tracers species names
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