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[PULL REQUEST] Ecophysiology module that simulates stomatal resistance, plant productivity and isoprene emission #629

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[PULL REQUEST] Ecophysiology module that simulates stomatal resistance, plant productivity and isoprene emission #629

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Commits on Feb 1, 2021

  1. Implement ecophysiology module and PFT-specific dry deposition veloci… 

    …ty diagnostics

Fixes for using State_Grid object

Fix for removal of NC_DIAG preprocessor flag

Fixes for replacing am_I_Root with Input_Opt in state_met_mod.F90 and state_chm_mod.F90
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    joeylamcy committed Feb 1, 2021
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Commits on Feb 3, 2021

  1. Implement photosynthesis-dependent isoprene emission. 

    Add PFT-specific isoprene emission output

Formulae changed: base IEFs are scaled to canopy level by multiplying canopy GPP and dividing by leaf-level GPP

Zero EcophyISOP_EMIS at the start of emission timestep.

Set minimum of ISOP_EMIS to 0.

Implement online isoprene emission flux in vdiff_mod instead of mixing_mod; Define a new diagnostic to extract HEMCO isoprene emission values

Fixes including removal of am_I_Root and excessive codes etc.

Remove underscore in ecophysiology variable names in StateDiag
    @joeylamcy
    joeylamcy committed Feb 3, 2021
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Commits on Feb 8, 2021

  1. Merge branch 'isop_emis_12.9.3' from old science codebase into featur… 

    …e/ecophys_module in the new science codebase.
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    joeylamcy committed Feb 8, 2021
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  2. Bug fix after merge

    @joeylamcy
    joeylamcy committed Feb 8, 2021
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  3. Add ecophysiology options in run directory.

    @joeylamcy
    joeylamcy committed Feb 8, 2021
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Commits on Feb 20, 2021

  1. Merge branch 'feature/ecophys_module' of https://github.com/amospktai… 

    …/geos-chem-ecophysiol into feature/ecophys_module
    @joeylamcy
    joeylamcy committed Feb 20, 2021
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  2. Remove redundant codes in mixing_mod.F90

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    joeylamcy committed Feb 20, 2021
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Commits on Feb 22, 2021

  1. Add DryDepVelPFT collection, disable ecophysiology collection by default

    @joeylamcy
    joeylamcy committed Feb 22, 2021
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  2. Rename "Ecophys_const" collection name 

    Rename "Ecophys_const" collection to "Ecophy_const" collection
    @joeylamcy
    joeylamcy committed Feb 22, 2021
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Commits on Feb 25, 2021

  1. Changed ozone damage option 'HI' to 'HIGH'.

    @joeylamcy
    joeylamcy committed Feb 25, 2021
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  2. use NUMPFT instead of a fixed number in Init_Ecophy

    @joeylamcy
    joeylamcy committed Feb 25, 2021
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Commits on Feb 26, 2021

  1. Bug fix: Character length of O3DmgOpt in ecophy_mod should be 4

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    joeylamcy committed Feb 26, 2021
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