Force Atlas produces blank screen

[m4chi]

Expected Behavior

Force Atlas layout is applied

Current Behavior

Graph disappears, blank window.

Possible Solution

Force Atlas seems to produce this error, the graph is layouted properly with Force Atlas 2.

Steps to Reproduce

1. Start Gephi
2. Open Graph file
3. Apply Layout

Context

Your Environment

System Info:
Product Version = Gephi 0.9.2 201709241107
Operating System = Linux version 5.11.0-38-generic running on amd64
Java; VM; Vendor = 1.8.0_292; OpenJDK 64-Bit Server VM 25.292-b10; Private Build
Runtime = OpenJDK Runtime Environment 1.8.0_292-8u292-b10-0ubuntu1~20.04-b10
Java Home = /usr/lib/jvm/java-8-openjdk-amd64/jre
System Locale; Encoding = en_US (gephi); UTF-8
Home Directory = /home/martin
Current Directory = /home/martin
User Directory = /home/martin/.gephi/0.9.2/dev
Cache Directory = /home/martin/.gephi/0.9.2/dev/var/cache
Installation = /home/martin/researchtools/gephi-0.9.2/platform
/home/martin/researchtools/gephi-0.9.2/gephi
/home/martin/researchtools/gephi-0.9.2/platform
Diagnostic information
Input arguments:
-Djdk.home=/usr/lib/jvm/java-8-openjdk-amd64
-Dnetbeans.running.environment=gnome
-Dnetbeans.dirs=/home/martin/researchtools/gephi-0.9.2/platform:/home/martin/researchtools/gephi-0.9.2/gephi:
-Dnetbeans.home=/home/martin/researchtools/gephi-0.9.2/platform
-Xms1024m
-Xmx44805m
-Xverify:none
-Dsun.java2d.noddraw=true
-Dsun.awt.noerasebackground=true
-Dnetbeans.indexing.noFileRefresh=true
-Dplugin.manager.check.interval=EVERY_DAY
-DaddExports:java.desktop/sun.awt=ALL-UNNAMED
-DaddExports:java.base/jdk.internal.jrtfs=ALL-UNNAMED
-DaddExports:java.desktop/java.awt.peer=ALL-UNNAMED
-DaddExports:java.desktop/com.sun.beans.editors=ALL-UNNAMED
-DaddExports:java.desktop/sun.awt.im=ALL-UNNAMED
-DaddExports:java.desktop/com.sun.java.swing.plaf.gtk=ALL-UNNAMED
-DaddExports:java.management/sun.management=ALL-UNNAMED
-XX:+HeapDumpOnOutOfMemoryError
-XX:HeapDumpPath=/home/martin/.gephi/0.9.2/dev/var/log/heapdump.hprof
Compiler: HotSpot 64-Bit Tiered Compilers
Heap memory usage: initial 1024.0MB maximum 39828.0MB
Non heap memory usage: initial 2.4MB maximum -1b
Garbage collector: PS Scavenge (Collections=2 Total time spent=0s)
Garbage collector: PS MarkSweep (Collections=2 Total time spent=0s)
Classes: loaded=7802 total loaded=7802 unloaded 0
INFO [org.netbeans.core.ui.warmup.DiagnosticTask]: Total memory 67,115,065,344
INFO [null]: Total physical memory 67,115,065,344
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/View/ marked with the position attribute: [org-netbeans-core-windows-actions-ToggleFullScreenAction.instance], but some are: [ToggleFullScreenAction.shadow]
WARNING [org.openide.filesystems.Ordering]: Found same position 333 for both Menu/Window/org-gephi-desktop-scripting-ConsoleTopComponent.shadow and Menu/Window/org-gephi-plugins-twitter-panel-MainTwitterWindows.shadow
WARNING [org.openide.filesystems.Ordering]: Not all children in Menu/Window/ marked with the position attribute: [cz-cvut-fit-gephi-multimode-MultiModeWindowTopComponent.shadow, fr-inria-edelweiss-SemanticWebImportMainWindowTopComponent.shadow, org-bitnine-AgensGraphImportPanel.shadow], but some are: [org-gephi-desktop-clustering-ContextTopComponent.shadow, org-gephi-desktop-datalab-DataTableTopComponent.shadow, org-gephi-desktop-scripting-ConsoleTopComponent.shadow, org-gephi-plugins-twitter-panel-MainTwitterWindows.shadow, org-gephi-desktop-filters-FiltersTopComponent.shadow, org-gephi-visualization-component-GraphTopComponent.shadow, org-gephi-desktop-layout-LayoutTopComponent.shadow, org-netbeans-core-io-ui-IOWindowAction.shadow, org-gephi-desktop-preview-PreviewTopComponent.shadow, org-gephi-desktop-preview-PreviewSettingsTopComponent.shadow, org-gephi-desktop-appearance-AppearanceTopComponent.shadow, org-gephi-desktop-welcome-WelcomeAction.shadow, org-gephi-desktop-statistics-StatisticsTopComponent.shadow, org-gephi-desktop-timeline-TimelineWindowAction.shadow, org-gephi-desktop-streaming-StreamingTopComponent.shadow, Separator4_1.instance, Separator3.instance, ConfigureWindow, org-netbeans-core-windows-actions-ResetWindowsAction.shadow, Separator4.instance, CloseWindowAction.shadow, GroupsMenuAction.shadow]
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_update_center.instance: url_key attribute deprecated in favor of url
WARNING [org.netbeans.modules.autoupdate.updateproviders.AutoupdateCatalogFactory]: Services/AutoupdateType/org_gephi_branding_update_center_1.instance: url_key attribute deprecated in favor of url
init: Bootstrapping class not in Py.BOOTSTRAP_TYPES[class=class org.python.core.PyStringMap]
WARNING [org.netbeans.TopSecurityManager]: use of system property netbeans.user has been obsoleted in favor of InstalledFileLocator/Places at org.gephi.desktop.scripting.ConsoleTopComponent.newJythonConsole(ConsoleTopComponent.java:164)
INFO [org.netbeans.core.ui.focus]: External Changes Refresh on focus gain disabled

[wetneb]

Hi @m4chi,
Thanks for your report! It seems difficult to work on this issue without a sample graph file, since it is likely that the issue depends on the graph. Would you be able to provide one? Thanks!