PubZ - Publication Zoo

Publication management system for your lab.

Full Document

Document

Requirements

• docker
• docker-compose
• (poetry)

Instlation (Dev Environment)

Here, let's install PubZ app for development environemnt. For production use, see ./deploy.

Step.Make DB's Configuration File

Make PubZ/.env and PubZ/deploy/.env.

Example:

MYSQL_ROOT_PASSWORD=mJKB26xRuY
MYSQL_DATABASE=docker
MYSQL_USER=docker
MYSQL_PASSWORD=ipTVFzI5Hx
DJANGO_SECRET_KEY="a10^j@6^2q$y*c&ks29$gnb7*3eodvqp!4!$7h31mlsq0ad3+s"
VIRTUAL_HOST="pubz.example.com"

WARNING: Please change secret key by yorself for production mode. To generate own key, check here.

# Generate Secret Key
from django.core.management.utils import get_random_secret_key

secret_key = get_random_secret_key()
text = 'SECRET_KEY = \'{0}\''.format(secret_key)
print(text)

Step.1 Build Docker Containers

Move to the directory which docker-compose.yml exists and issue these commands

# Create Storage Directory
mkdir -p ./storage/db/data
# Create docker image with make command
cd docker/django
make build
# Start containers
cd ../../
docker-compose up 

Then, you get 3 containers db, phpmyadmin, django, (storage) and each containers are connected each others.

Step.2 Initalize Django App

For starting django App, you need to initalize database (this system use mysql). Issue these commands,

# Enter into the django container
docker-compose exec django bash

# == In django container ==
# Migrate database
python manage.py migrate
# Create Super User
python manage.py createsuperuser
# Migrate Bibtex models
python manage.py makemigrations core
python manage.py migrate
# Collect static files (e.g., js, css)
python manage.py collectstatic

For development, use Username=root, email=test@test.com, pw=password (pwBman88)

After these commands, please restart all the conatiners.

Step.3 Start Development Servers

Django application:

# == In django container ==
cd /code
bash run

PubZ docs (dev server):

# == In django container ==
$ cd /root/docs/mkdocs
$ mkdocs serve

Step.4 Check website

With this setup, we launched 3 containers. You can access to 3 of them with your browser.

App	URL
Django	http://localhost:7000
phpmyadmin	http://localhost:7070
docs	http://localhost:7777

---

Setup Production Server

# Create Image with make command
cd docker/django-uwsgi-nginx/
make build
# Start containers
cd ../../
docker-compose -f docker-compose-prd.yaml up -d

Container and Ports

App	Container Name	Port (External)
Django	pubz-web-prd	8000
MarinaDB	pubz-db-prd	3306

---

Licence

MIT License