The package includes CpG site annotation for miRNA genes and lncRNA genes. It also includes some example datasets for illustrative purposes in the vignette:
- HM450_lncRNA_probes.rda
- HM450_miRNA_probes.rda
- EPIC_lncRNA_probes.rda
- EPIC_miRNA_probes.rda
- EpigenomeMap.rda
- LUAD.sample.annotation
- TCGA_BatchData
- MET.data
- mRNA.data
- microRNA.data
- lncRNA.data
- Sample_EpiMixResults_lncRNA
- Sample_EpiMixResults_miRNA
- Sample_EpiMixResults_Regular
- Sample_EpiMixResults_Enhancer
- lncRNA expression data of tumors from TCGA that are stored in the ExperimentHub
Yuanning Zheng, John Jun, Kevin Brennan and Olivier Gevaert
Stanford Center for Biomedical Informatic Research (BIMR)
Department of Medicine
1265 Welch Road
Stanford CA, 94305-5479