first pass at adding GloBI index configuration; related to https://gi…

.github/workflows/review.yml

@@ -0,0 +1,23 @@
+# This workflow will review a GloBI indexed dataset.
+# For more information see: https://globalbioticinteractions.org
+
+name: GloBI review by Elton
+
+on:
+  push:
+    branches: [ '*' ]
+  pull_request:
+    branches: [ '*' ]
+  schedule:
+    - cron: "0 0 * * 1"
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+      - uses: actions/checkout@v2
+      - name: download review script
+        run: curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh" > check-dataset.sh
+      - name: review dataset
+        run: bash check-dataset.sh "${GITHUB_REPOSITORY}"

.gitignore

@@ -1,6 +1,3 @@
-.git
-.Rhistory
-.DS_Store
-IUCN_tables.R
-.Rproj.user
-Texto
+.elton/
+add_travis_artifact_upload_keys.sh
+datasets/

.travis.yml

@@ -0,0 +1,5 @@
+install:
+  - curl -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/check-dataset.sh"
+    > check-dataset.sh
+  - chmod +x check-dataset.sh
+script: "./check-dataset.sh ${TRAVIS_REPO_SLUG}"

README.md

@@ -83,3 +83,9 @@ Firstly, we thank Mauro Galetti and Milton Ribeiro, from the Sao Paulo State Uni
 ## Reference
 
 Florez-Montero GL, Muylaert RL, Geiselman C, Nogueira MR, Santana SE, Stevens RD, Tschapka M, Rodrigues FA, Mello MAR. 2021. NeoBat Interactions: a data set of bat-plant interactions in the Neotropics. *Submitted*.
+
+## Indexing
+
+[![Review](https://github.com/gflorezm/NeoBat_Interactions/actions/workflows/review.yml/badge.svg)](https://github.com/gflorezm/NeoBat_Interactions/actions) [![Build Status](https://travis-ci.com/gflorezm/NeoBat_Interactions.svg)](https://travis-ci.com/gflorezm/NeoBat_Interactions) [![GloBI](https://api.globalbioticinteractions.org/interaction.svg?accordingTo=globi:gflorezm/NeoBat_Interactions)](https://globalbioticinteractions.org/?accordingTo=globi:gflorezm/NeoBat_Interactions)
+
+This repository is configured to be indexed by Global Biotic Interactions (GloBI, https://globalbioticinteractions.org). 

globi.json

@@ -0,0 +1,80 @@
+{
+  "@context" : [ "http://www.w3.org/ns/csvw", {
+    "@language" : "en"
+  } ],
+  "rdfs:comment" : [ "inspired by https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/" ],
+  "tables" : [ {
+    "@context" : [ "http://www.w3.org/ns/csvw", {
+      "@language" : "en"
+    } ],
+    "rdfs:comment" : [ "inspired by https://www.w3.org/TR/2015/REC-tabular-data-model-20151217/" ],
+    "url" : "Data/NeoBat_Interactions_Records.csv",
+    "dcterms:bibliographicCitation" : "Florez-Montero, G.L., Muylaert, R.L., Nogueira, M.R., Geiselman, C., Santana, S.E., Stevens, R.D., Tschapka, M., Rodrigues, F.A. and Mello, M.A.R. (2022), NeoBat Interactions: A data set of bat–plant interactions in the Neotropics. Ecology. Accepted Author Manuscript e3640. https://doi.org/10.1002/ecy.3640",
+    "delimiter" : ",",
+    "headerRowCount" : 1,
+    "null" : [ "" ],
+    "tableSchema" : {
+      "columns" : [ {
+        "name" : "IDCode",
+        "titles" : "IDCode",
+        "datatype" : "string"
+      }, {
+        "name" : "SiteCode",
+        "titles" : "SiteCode",
+        "datatype" : "string"
+      }, {
+        "name" : "RefCode",
+        "titles" : "RefCode",
+        "datatype" : "string"
+      }, {
+        "name" : "sourceTaxonGenus",
+        "titles" : "BatGenus",
+        "datatype" : "string"
+      }, {
+        "name" : "sourceTaxonSpecies",
+        "titles" : "BatSpecies",
+        "datatype" : "string"
+      }, {
+        "name" : "CurrentBatSpecies",
+        "titles" : "CurrentBatSpecies",
+        "datatype" : "string"
+      }, {
+        "name" : "TrophicGuild",
+        "titles" : "TrophicGuild",
+        "datatype" : "string"
+      }, {
+        "name" : "targetTaxonFamily",
+        "titles" : "PlantFamily",
+        "datatype" : "string"
+      }, {
+        "name" : "targetTaxonGenus",
+        "titles" : "PlantGenus",
+        "datatype" : "string"
+      }, {
+        "name" : "targetTaxonSpecies",
+        "titles" : "PlantSpecies",
+        "datatype" : "string"
+      }, {
+        "name" : "CurrentPlantSpecies",
+        "titles" : "CurrentPlantSpecies",
+        "datatype" : "string"
+      }, {
+        "name" : "LifeForm",
+        "titles" : "LifeForm",
+        "datatype" : "string"
+      }, {
+        "name" : "SuccessionalStage",
+        "titles" : "SuccessionalStage",
+        "datatype" : "string"
+      }, {
+        "name" : "interactionTypeName",
+        "titles" : "Interaction",
+        "datatype" : "string"
+      }, {
+        "name" : "Weight",
+        "titles" : "Weight",
+        "datatype" : "string"
+      } ]
+    }
+  } ]
+}

interaction_types_mapping.csv

@@ -0,0 +1,3 @@
+provided_interaction_type_label,provided_interaction_type_id,mapped_to_interaction_type_label,mapped_to_interaction_type_id
+Frugivory,,eats,http://purl.obolibrary.org/obo/RO_0002470
+Nectarivory,,eats,http://purl.obolibrary.org/obo/RO_0002470