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Use is to compare type of objects
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ggirelli
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Oct 26, 2021
* Updated requirements. * Bump numpy from 1.20.1 to 1.20.2 (#6) * Bump rich from 9.13.0 to 10.0.0 (#7) * Bump rich from 10.0.0 to 10.0.1 (#8) * Bump tqdm from 4.59.0 to 4.60.0 (#11) * Bump pytest from 6.2.2 to 6.2.3 (#10) * Bump rich from 10.0.1 to 10.1.0 (#9) * Bump black from 20.8b1 to 21.4b0 (#12) * Bump black from 21.4b0 to 21.4b1 (#13) * Bump black from 21.4b1 to 21.4b2 (#14) * Bump pytest from 6.2.3 to 6.2.4 (#15) * Bump black from 21.4b2 to 21.5b0 (#16) * Bump rich from 10.1.0 to 10.2.0 (#19) * Bump black from 21.5b0 to 21.5b1 (#17) * Bump numpy from 1.20.2 to 1.20.3 (#18) * Bump rich from 10.2.0 to 10.2.2 (#21) * Bump black from 21.5b1 to 21.5b2 (#23) * Bump tqdm from 4.60.0 to 4.61.0 (#22) * Bump biopython from 1.78 to 1.79 (#24) * Bump rich from 10.2.2 to 10.3.0 (#25) * Bump black from 21.5b2 to 21.6b0 (#26) * Bump tqdm from 4.61.0 to 4.61.1 (#27) * Bump rich from 10.3.0 to 10.4.0 (#28) * Bump h5py from 3.2.1 to 3.3.0 (#30) * Bump numpy from 1.20.3 to 1.21.0 (#29) * Bump rich from 10.4.0 to 10.5.0 (#31) * Bump tqdm from 4.61.1 to 4.61.2 (#32) * Bump rich from 10.5.0 to 10.6.0 (#33) * Bump black from 21.6b0 to 21.7b0 (#34) * Bump numpy from 1.21.0 to 1.21.1 (#35) * Bump tqdm from 4.61.2 to 4.62.0 (#36) * Bump rich from 10.6.0 to 10.7.0 (#37) * Bump tqdm from 4.62.0 to 4.62.1 (#38) * Bump h5py from 3.3.0 to 3.4.0 (#39) * Bump tqdm from 4.62.1 to 4.62.2 (#40) * Bump rich from 10.7.0 to 10.9.0 (#41) * Bump pytest from 6.2.4 to 6.2.5 (#42) * Bump black from 21.7b0 to 21.8b0 (#43) * Bump black from 21.8b0 to 21.9b0 (#45) * Bump tqdm from 4.62.2 to 4.62.3 (#46) * Bump rich from 10.9.0 to 10.10.0 (#47) * Bump rich from 10.10.0 to 10.11.0 (#48) * Bump rich from 10.11.0 to 10.12.0 (#49) * Bump joblib from 1.0.1 to 1.1.0 (#50) * 'Refactored by Sourcery' (#44) Co-authored-by: Sourcery AI <> * Added and passing pre-commits * fix: removed requirements.txt * Create .deepsource.toml * Switching from `argparse` to `click` (#52) * fix: removed vulture pre-commit hook * fix: added click dependency * feat: added tempdir setter function * feat: switched from argparse to click * fix: unnecessary f-strings * 'Refactored by Sourcery' (#53) Co-authored-by: Sourcery AI <> * fix: blacked after sourcery * fix: refactored * fix: refactored * feat: common click arguments to module and removed unused assert enable * refactor: moved copy batches to io module Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com> * fix: fixed flake8 hook and passed * fix: mypyed * Setting up new workflow (#54) * test: setting up new workflow * fix: added trigger on PR to dev * fix: switching poetry install to action * test: removed poetry run * fix: added cache load and changed poetry install * fix: testing again with poetry run * test: using .venv * fix: use poetry shell * fix: based on snok action * feat: added poetry install caching * feat: added isort and darglint * feat: added isort pre-commit hook * fix: mypyed * fix: docstrings and updated pre-commits with darglint * 'Refactored by Sourcery' (#55) Co-authored-by: Sourcery AI <> * fix: darglint support to flake8 workflow step * fix: blacked after sorcery * fix: mypy missing type * ci: removed old workflow * fix: pytested * 'Refactored by Sourcery' (#56) Co-authored-by: Sourcery AI <> * fix: removed extra safety argument * ci: removed safety check Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com> * Renamed package. * ci: reset cache * Remove blank lines after docstring (#57) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Fix comparison constant position (#58) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Fix `type` operand placement (#59) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Remove unnecessary `pass` (#60) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Change methods not using its bound instance to staticmethods (#61) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Remove methods with unnecessary super delegation. (#62) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Remove assert statement from non-test files (#63) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * 'Refactored by Sourcery' (#64) Co-authored-by: Sourcery AI <> * fix: mypyed, flaked, darglinted, pytested * ci: added test_patterns for deepsource * Remove methods with unnecessary super delegation. (#65) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Refactor unnecessary `else` / `elif` when `if` block has a `return` statement (#66) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Iterate dictionary directly (#67) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Refactor unnecessary `else` / `elif` when `if` block has a `break` statement (#68) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Use `is` to compare type of objects (#69) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * `raise NotImplementedError` in empty functions (#71) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Remove implicit `object` from the base class (#72) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * Merge collapsible `with` statements (#73) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * 'Refactored by Sourcery' (#70) Co-authored-by: Sourcery AI <> * fix: reversed wrong automatic fix * Remove assert statement from non-test files (#74) Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com> * fix: unassigned string * ci: removed empty line * fix: removed empty line before docstring * fix: addedd missing raises docstrings * fix: added missing class docstring * fix: add missing docstrings, see issue #79 (#81) * fix: added missing docstrings * fix: added missing docstrings * fix: accidental recursion * fix: pytested and added missing docstring * docs: added missing method docstrings * docs: added missing docstrings to parsers module * docs: added missing docstrings to join module * docs: added docstrings to io module * docs: added missing docstrings to batcher module * fix: added missing docstrings to batch module * docs: added missing docstrings to abundance module * 'Refactored by Sourcery' (#82) Co-authored-by: Sourcery AI <> * ci: blacked after sourcery Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com> * fix: function contains unused argument (PYL-W0613), closes #75 (#83) * fix: removed unused method arguments from join module * fix: fixed unused method arguments in abundance module * fix: incorrect method overriding * fix: nested next in try-except * fix: integer indexing * fix: replaced stopiteration with return * fix: batch size now properly set * docs: updated README * v1.0.0 Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> Co-authored-by: sourcery-ai[bot] <58596630+sourcery-ai[bot]@users.noreply.github.com> Co-authored-by: deepsource-autofix[bot] <62050782+deepsource-autofix[bot]@users.noreply.github.com>
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