Add CIRAD logo #2
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# NOTE: This workflow is overkill for most R packages | |
# check-standard.yaml is likely a better choice | |
# usethis::use_github_action("check-standard") will install it. | |
# | |
# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag. | |
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions | |
on: | |
push: | |
branches: | |
- main | |
- master | |
pull_request: | |
branches: | |
- main | |
- master | |
name: R-CMD-check | |
jobs: | |
R-CMD-check: | |
runs-on: ${{ matrix.config.os }} | |
name: ${{ matrix.config.os }} (${{ matrix.config.r }}) | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: 'devel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest", http-user-agent: "R/4.0.0 (ubuntu-20.04) R (4.0.0 x86_64-pc-linux-gnu x86_64 linux-gnu) on GitHub Actions" } | |
- {os: ubuntu-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
- {os: ubuntu-latest, r: 'oldrel', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Install stringi and latex packages on Linux | |
if: runner.os == 'Linux' | |
run: | | |
sudo apt-mark hold grub-efi-amd64-signed | |
sudo apt-get update --fix-missing | |
sudo apt-get -y upgrade | |
sudo apt-get update | |
sudo Rscript -e "install.packages('stringi',repos='http://cran.us.r-project.org')" | |
sudo apt-get install texlive-latex-base texlive-fonts-recommended texlive-fonts-extra | |
- name: Query dependencies | |
run: | | |
install.packages('remotes') | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds") | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Install system dependencies | |
if: runner.os == 'Linux' | |
run: | | |
while read -r cmd | |
do | |
eval sudo $cmd | |
done < <(Rscript -e 'writeLines(remotes::system_requirements("ubuntu", "20.04"))') | |
- name: Cache R packages | |
if: runner.os != 'Windows' | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-1- | |
- name: Install dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
remotes::install_version("rcmdcheck", version="1.3.3") | |
shell: Rscript {0} | |
- name: Session info | |
run: | | |
options(width = 100) | |
pkgs <- installed.packages()[, "Package"] | |
sessioninfo::session_info(pkgs, include_base = TRUE) | |
shell: Rscript {0} | |
- name: Check | |
env: | |
_R_CHECK_CRAN_INCOMING_: false | |
run: | | |
rcmdcheck::rcmdcheck(args = c("--as-cran"), error_on = "warning", check_dir = "check") | |
shell: Rscript {0} | |
- name: Show testthat output | |
if: always() | |
run: find check -name 'testthat.Rout*' -exec cat '{}' \; || true | |
shell: bash | |
- name: Upload check results | |
if: failure() | |
uses: actions/upload-artifact@v3 | |
with: | |
name: ${{ runner.os }}-r${{ matrix.config.r }}-results | |
path: check | |
pkgdown: | |
runs-on: ${{ matrix.config.os }} | |
strategy: | |
fail-fast: false | |
matrix: | |
config: | |
- {os: ubuntu-latest, r: 'release', rspm: "https://packagemanager.rstudio.com/cran/__linux__/focal/latest"} | |
env: | |
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | |
RSPM: ${{ matrix.config.rspm }} | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- uses: actions/checkout@v3 | |
- uses: r-lib/actions/setup-r@v2 | |
with: | |
r-version: ${{ matrix.config.r }} | |
http-user-agent: ${{ matrix.config.http-user-agent }} | |
- uses: r-lib/actions/setup-pandoc@v2 | |
- name: Install debian packages | |
run: | | |
sudo apt-get install r-base-dev devscripts libicu-dev language-pack-pl libharfbuzz-dev libfribidi-dev libgsl-dev jags libgdal-dev | |
sudo Rscript -e "install.packages('stringi',repos='http://cran.us.r-project.org')" | |
sudo Rscript -e "install.packages('terra',repos='http://cran.us.r-project.org')" | |
sudo Rscript -e "install.packages('raster',repos='http://cran.us.r-project.org')" | |
- name: Query dependencies | |
run: | | |
install.packages('remotes', repos="http://cran.us.r-project.org") | |
saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds") | |
writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | |
shell: Rscript {0} | |
- name: Cache R packages | |
uses: actions/cache@v3 | |
with: | |
path: ${{ env.R_LIBS_USER }} | |
key: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-3-${{ hashFiles('.github/depends.Rds') }} | |
restore-keys: ${{ runner.os }}-${{ hashFiles('.github/R-version') }}-3- | |
- name: Install dependencies | |
run: | | |
remotes::install_deps(dependencies = TRUE) | |
install.packages("pkgdown", dependencies=TRUE) | |
shell: Rscript {0} | |
- name: Install package | |
run: R CMD INSTALL . | |
- name: Deploy package | |
run: | | |
git config --local user.email "actions@github.com" | |
git config --local user.name "GitHub Actions" | |
Rscript -e 'pkgdown::deploy_to_branch(new_process = FALSE)' | |