pydra-deface

Pydra workflow for defacing structural brain images.

Using the CLI

Install:

pipx install pydra-deface

Example:

pydra-deface -t template.nii.gz -m mask.nii.gz input.nii.gz defaced.nii.gz

Using the Pydra task

Install:

pip install pydra_deface

Example:

from pydra_deface.tasks import deface

task = deface(
    input_image="input.nii.gz",
    output_image="defaced.nii.gz",
    template_image="template.nii.gz",
    template_mask="mask.nii.gz",
)

task()