Segmentation fault: Open *.smi + activate debug

[ghutchis]

• Opening *.smi files produces a garbled "View", activating engine "Debug" additionaly segfaults avogadro.

Reported by: soc88

[ghutchis]

Logged In: YES
user_id=1500648
Originator: NO

can you attach some *.smi files to this bug so I can have something to test. I don't even know what an smi file looks like.

Original comment by: @milkypostman

[ghutchis]

Logged In: YES
user_id=684210
Originator: NO

http://filext.com/file-extension/SMI tells me it is a SMILES format. Googling even more gives me these files:

http://www.perlmol.org/examples/combinatorial_enumeration/amines.smi

http://www.perlmol.org/examples/combinatorial_enumeration/acid_chlorides.smi

Original comment by: @cniehaus

[ghutchis]

Logged In: YES
user_id=684210
Originator: NO

Ok, I played around with Avo. I loaded both mentioned files and cannot makes Avo crash.

But yes, the View is pointless: All I get is ONE atom. I guess it should be four molecules at a time for amines.smi...

kde4@moinmoin:~/build/avo> cat amines.smi
CN methylamine
CCN ethylamine
CCCNC propylamine
c1ccccc1N aniline

Original comment by: @cniehaus

[ghutchis]

Logged In: YES
user_id=1883751
Originator: YES

Weird, I tested 15 different *.smi from the chemical-structures-2.0.1 package. Result:

• No one produced a garbled output.
• Debug didn't crash it.
  It seems this bug has disappeared in more recent releases.

I think it's the best to close the bug with resolution "Out of Date", if the bug appears again, we can reopen it.

Original comment by: soc88