rm duplicates tests

giannisdoukas · Jul 14, 2020 · 3c6221d · 3c6221d
1 parent f49449b
commit 3c6221d
Showing 1 changed file with 0 additions and 112 deletions.
diff --git a/tests/test_CWLKernel_magics.py b/tests/test_CWLKernel_magics.py
@@ -118,52 +118,6 @@ def test_display_data_magic_command(self):
             responses[-1][0][2]['text']
         )
 
-    def test_display_data_magic_command(self):
-        from cwlkernel.CWLKernel import CWLKernel
-        kernel = CWLKernel()
-        # monitor responses
-        responses = []
-        kernel.send_response = lambda *args, **kwargs: responses.append((args, kwargs))
-
-        with open(os.sep.join([self.cwl_directory, 'echo_stdout.cwl'])) as f:
-            workflow_str = f.read()
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(workflow_str, False)
-        )
-
-        with open(os.sep.join([self.data_directory, 'echo-job.yml'])) as f:
-            data = f"% execute echo\n{f.read()}"
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(data, False)
-        )
-
-        kernel.do_execute('% displayData')
-        self.assertEqual(
-            'ERROR: you must select an output to display. Correct format:\n % displayData [output name]',
-            responses[-1][0][2]['text']
-        )
-
-        kernel.do_execute('% displayData echo_output')
-        self.assertEqual(
-            'Hello world!\n',
-            responses[-1][0][2]['text']
-        )
-
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(data, False)
-        )
-        self.assertEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute('% displayData echo_output')
-        )
-        self.assertEqual(
-            'Hello world!\n',
-            responses[-1][0][2]['text']
-        )
-
     def test_logs_magic_command(self):
         from cwlkernel.CWLKernel import CWLKernel
         kernel = CWLKernel()
@@ -365,72 +319,6 @@ def test_compose(self):
     location: {os.path.join(self.data_directory, "data.csv")}""")
         )
 
-    def test_compose(self):
-        kernel = CWLKernel()
-        # cancel send_response
-        responses = []
-        kernel.send_response = lambda *args, **kwargs: responses.append((args, kwargs))
-        with open(os.sep.join([self.cwl_directory, 'head.cwl'])) as f:
-            head = f.read()
-        with open(os.sep.join([self.cwl_directory, 'tail.cwl'])) as f:
-            tail = f.read()
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(head)
-        )
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(tail)
-        )
-
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute("""% newWorkflow main
-% newWorkflowAddStep tail tailstepid
-% newWorkflowAddStep head headstepid
-% newWorkflowAddInput headstepid headinput
-id: inputfile
-type: File
-% newWorkflowAddStepIn tailstepid headstepid headoutput
-tailinput: headstepid/headoutput
-% newWorkflowAddOutputSource tailstepid/tailoutput File
-% newWorkflowBuild""")
-        )
-
-        self.assertDictEqual(
-            {
-                "cwlVersion": "v1.0",
-                "class": "Workflow",
-                "id": "main",
-                "inputs": [{'id': 'inputfile', 'type': 'File'}],
-                "outputs": [{'id': 'tailoutput', 'type': 'File', 'outputSource': "tailstepid/tailoutput"}],
-                "steps": {
-                    "headstepid":
-                        {
-                            "run": "head.cwl",
-                            "in": {"headinput": "inputfile"},
-                            "out": ['headoutput']
-                        },
-                    "tailstepid":
-                        {
-                            "run": "tail.cwl",
-                            "in": {"tailinput": "headstepid/headoutput"},
-                            "out": ['tailoutput']
-                        },
-                },
-                'requirements': {}
-            },
-            yaml.load(kernel._workflow_repository.get_by_id("main").to_yaml(), yaml.Loader),
-        )
-
-        self.assertDictEqual(
-            {'status': 'ok', 'execution_count': 0, 'payload': [], 'user_expressions': {}},
-            kernel.do_execute(f"""% execute main
-inputfile: 
-    class: File
-    location: {os.path.join(self.data_directory, "data.csv")}""")
-        )
-
     def test_githubImport(self):
         when(requests) \
             .get("https://api.github.com/repos/giannisdoukas/CWLJNIKernel/contents/tests/cwl/head.cwl?ref=dev") \