update snippets.ipynb

giannisdoukas · Jun 9, 2020 · f2016e5 · f2016e5
1 parent 865bc97
commit f2016e5
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Showing 2 changed files with 8 additions and 8 deletions.
diff --git a/examples/snippets.ipynb b/examples/snippets.ipynb
@@ -23,7 +23,7 @@
        "id": "head"
       },
       "text/plain": [
-       "<IPython.core.display.JSON object>"
+       "{\"class\": \"CommandLineTool\", \"cwlVersion\": \"v1.0\", \"id\": \"head\", \"baseCommand\": [\"head\"]}"
       ]
      },
      "metadata": {
@@ -77,7 +77,7 @@
        ]
       },
       "text/plain": [
-       "<IPython.core.display.JSON object>"
+       "{\"class\": \"CommandLineTool\", \"cwlVersion\": \"v1.0\", \"id\": \"head\", \"baseCommand\": [\"head\"], \"inputs\": [{\"id\": \"number_of_lines\", \"type\": \"int?\", \"inputBinding\": {\"position\": 0, \"prefix\": \"-n\"}}, {\"id\": \"headinput\", \"type\": \"File\", \"inputBinding\": {\"position\": 1}}]}"
       ]
      },
      "metadata": {
@@ -142,7 +142,7 @@
        ]
       },
       "text/plain": [
-       "<IPython.core.display.JSON object>"
+       "{\"class\": \"CommandLineTool\", \"cwlVersion\": \"v1.0\", \"id\": \"head\", \"baseCommand\": [\"head\"], \"inputs\": [{\"id\": \"number_of_lines\", \"type\": \"int?\", \"inputBinding\": {\"position\": 0, \"prefix\": \"-n\"}}, {\"id\": \"headinput\", \"type\": \"File\", \"inputBinding\": {\"position\": 1}}], \"outputs\": [{\"id\": \"headoutput\", \"type\": \"stdout\"}]}"
       ]
      },
      "metadata": {
@@ -222,7 +222,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 9,
+   "execution_count": 5,
    "metadata": {},
    "outputs": [
     {
@@ -241,15 +241,15 @@
         "class": "File",
         "http://commonwl.org/cwltool#generation": 0,
         "id": "headoutput",
-        "location": "file:///private/tmp/CWLKERNEL_DATA/055914f7-cd2a-457b-ac3a-cdb72b07a606/runtime_data/head.out",
+        "location": "file:///private/tmp/CWLKERNEL_DATA/7b8a73e9-d889-4a4f-b887-b04dfac5c7e0/runtime_data/head.out",
         "nameext": ".out",
         "nameroot": "head",
         "result_counter": 0,
         "size": 656
        }
       },
       "text/plain": [
-       "{\"headoutput\": {\"location\": \"file:///private/tmp/CWLKERNEL_DATA/055914f7-cd2a-457b-ac3a-cdb72b07a606/runtime_data/head.out\", \"basename\": \"head.out\", \"nameroot\": \"head\", \"nameext\": \".out\", \"class\": \"File\", \"checksum\": \"sha1$728aa6b07e4a63f29b8ab55af49609d84c8482e1\", \"size\": 656, \"http://commonwl.org/cwltool#generation\": 0, \"id\": \"headoutput\", \"result_counter\": 0}}"
+       "{\"headoutput\": {\"location\": \"file:///private/tmp/CWLKERNEL_DATA/7b8a73e9-d889-4a4f-b887-b04dfac5c7e0/runtime_data/head.out\", \"basename\": \"head.out\", \"nameroot\": \"head\", \"nameext\": \".out\", \"class\": \"File\", \"checksum\": \"sha1$728aa6b07e4a63f29b8ab55af49609d84c8482e1\", \"size\": 656, \"http://commonwl.org/cwltool#generation\": 0, \"id\": \"headoutput\", \"result_counter\": 0}}"
       ]
      },
      "metadata": {
@@ -270,7 +270,7 @@
   },
   {
    "cell_type": "code",
-   "execution_count": 10,
+   "execution_count": 6,
    "metadata": {},
    "outputs": [
     {

diff --git a/tests/test_CWLKernel.py b/tests/test_CWLKernel.py
@@ -758,7 +758,7 @@ def test_sample_csv(self):
 
         shape = pd.read_html(responses[-1][0][2]['data']['text/html'], header=None)[0].shape
         print('shape:', shape)
-        self.assertAlmostEqual(shape[0], 4, delta=2)
+        self.assertAlmostEqual(shape[0], 4, delta=3)
         self.assertEqual(shape[1], 20)