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Dev #1

Merged
merged 81 commits into from
Apr 5, 2020
Merged

Dev #1

merged 81 commits into from
Apr 5, 2020

Commits on Feb 18, 2020

  1. init CWLExecuteConfiguratorTests

    @giannisdoukas
    giannisdoukas committed Feb 18, 2020
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  2. add license

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    giannisdoukas committed Feb 18, 2020
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  3. add .idea in gitignore

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    giannisdoukas committed Feb 18, 2020
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  4. init IOManager

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    giannisdoukas committed Feb 18, 2020
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  5. logger collects infra metrics

    @giannisdoukas
    giannisdoukas committed Feb 18, 2020
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  6. add todo comment for handling tempfiles

    @giannisdoukas
    giannisdoukas committed Feb 18, 2020
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  7. add kernel requirements

    @giannisdoukas
    giannisdoukas committed Feb 18, 2020
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Commits on Feb 19, 2020

  1. store input in kernels memory

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  2. add return in do_execution

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  3. add execute in core executor

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  4. init setup.py

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  5. add __main__.py in package

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  6. add type annotation in do_execute

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  7. init test for getting past results

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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  8. init kernel can execute echo workflow - partially working

    @giannisdoukas
    giannisdoukas committed Feb 19, 2020
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Commits on Feb 20, 2020

  1. copy paste cwl main in core executor

    @giannisdoukas
    giannisdoukas committed Feb 20, 2020
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  2. initial refactor on cwlmain

    @giannisdoukas
    giannisdoukas committed Feb 20, 2020
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Commits on Feb 22, 2020

  1. init travis yaml

    @giannisdoukas
    giannisdoukas committed Feb 22, 2020
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  2. fix venvs in travis

    @giannisdoukas
    giannisdoukas committed Feb 22, 2020
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  3. add build badge in README.md

    @giannisdoukas
    giannisdoukas committed Feb 22, 2020
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  4. add append files in IOManager

    @giannisdoukas
    giannisdoukas committed Feb 22, 2020
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Commits on Feb 23, 2020

  1. init access to past data

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  2. ignore txt files

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  3. fix dummy log message

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  4. change testcase name format

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  5. init loggers json schema

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  6. add logger to dict

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  7. implement load logged data

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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  8. implement save log files

    @giannisdoukas
    giannisdoukas committed Feb 23, 2020
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Commits on Feb 26, 2020

  1. add coveralls

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  2. run coveralls after script not after success

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  3. add coverage badge

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  4. disable multiple python versions in travis

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  5. add service name in travis

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  6. rm service_name

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  7. exclude __main__ from coverage

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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  8. automate add kernel requirements during setup

    @giannisdoukas
    giannisdoukas committed Feb 26, 2020
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Commits on Feb 27, 2020

  1. increase test coverage

    @giannisdoukas
    giannisdoukas committed Feb 27, 2020
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Commits on Feb 28, 2020

  1. add multiple os in travis

    @giannisdoukas
    giannisdoukas committed Feb 28, 2020
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  2. rm windows

    @giannisdoukas
    giannisdoukas committed Feb 28, 2020
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Commits on Mar 3, 2020

  1. test get data result from workflow without input

    @giannisdoukas
    giannisdoukas committed Mar 3, 2020
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  2. add get running kernels

    @giannisdoukas
    giannisdoukas committed Mar 3, 2020
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  3. make logger storage manager attribute of logger

    @giannisdoukas
    giannisdoukas committed Mar 3, 2020
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Commits on Mar 4, 2020

  1. a user can get access to past log data

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  2. add validate input files function

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  3. handling output files

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  4. hide issue with CWL configuration

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  5. make path for unittest dynamic

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  6. disable maxDiff in LoggerStorageManager tests

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  7. add jsonschema in requirements.txt

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  8. add data magic command

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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  9. show exception to user if a file missing

    @giannisdoukas
    giannisdoukas committed Mar 4, 2020
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Commits on Mar 5, 2020

  1. try include osx in travis

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  2. add print version in travis before install

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  3. add extra test in failing test

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  4. increase gitignore

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  5. add timestamp in logs

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  6. add pids in logs

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  7. change mtime to ctime

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  8. fix pip3 for osx in travis

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  9. order logs files by filename

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  10. add user flag in osx build

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  11. add virtualenv for osx build

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  12. fix source

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  13. add first jn example

    @giannisdoukas
    giannisdoukas committed Mar 5, 2020
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  14. clean travis file

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    giannisdoukas committed Mar 5, 2020
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Commits on Mar 10, 2020

  1. add second example

    @giannisdoukas
    giannisdoukas committed Mar 10, 2020
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  2. add parameter_reference example

    @giannisdoukas
    giannisdoukas committed Mar 10, 2020
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  3. add returning_output_files example

    @giannisdoukas
    giannisdoukas committed Mar 10, 2020
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Commits on Mar 24, 2020

  1. update test name

    @giannisdoukas
    giannisdoukas committed Mar 24, 2020
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Commits on Mar 26, 2020

  1. use factory for cwltool

    @giannisdoukas
    giannisdoukas committed Mar 26, 2020
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Commits on Mar 27, 2020

  1. replace cwltool with custom cwltool

    @giannisdoukas
    giannisdoukas committed Mar 27, 2020
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Commits on Mar 29, 2020

  1. display output of executed workflow

    @giannisdoukas
    giannisdoukas committed Mar 29, 2020
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Commits on Mar 30, 2020

  1. add display data magic command

    @giannisdoukas
    giannisdoukas committed Mar 30, 2020
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  2. update examples

    @giannisdoukas
    giannisdoukas committed Mar 30, 2020
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  3. fix error message

    @giannisdoukas
    giannisdoukas committed Mar 30, 2020
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  4. check for location and path

    @giannisdoukas
    giannisdoukas committed Mar 30, 2020
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  5. initialize examples

    @giannisdoukas
    giannisdoukas committed Mar 30, 2020
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Commits on Apr 2, 2020

  1. array outputs

    @giannisdoukas
    giannisdoukas committed Apr 2, 2020
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Commits on Apr 5, 2020

  1. clean execute

    @giannisdoukas
    giannisdoukas committed Apr 5, 2020
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  2. add note for windows

    @giannisdoukas
    giannisdoukas committed Apr 5, 2020
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