Fine-Mapping

Perform fine-mapping that identifies which genetic variants (SNPs) cause a complex, phenotypic trait. Do so by extending a probablistic regression model (SuSiE) to smartly incoprorate functional annotations.

Note: this repo is under active development and is not yet fully functional

Overview

TODO

Navigating the Repo

1. The directory code contains all my code for this project.
2. The directory texts contains relevant papers, summaries, or work of others.
3. The directory lab_ntbk contains my notes on experiments, extensions, implentation progress, and debugging.