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top IO API function + clean up + fixes
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Benoit Bovy committed Jun 22, 2016
1 parent 37d3fb8 commit 38143b3
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517 changes: 256 additions & 261 deletions ipynb/Test_Import_SFIT4_Run.ipynb
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671 changes: 671 additions & 0 deletions ipynb/Test_Load_Dataset.ipynb
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129 changes: 64 additions & 65 deletions ipynb/Test_Read_Inputs.ipynb
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Original file line number Diff line number Diff line change
Expand Up @@ -52,7 +52,7 @@
"<xarray.Dataset>\n",
"Dimensions: (level: 43, level_lbound: 44)\n",
"Coordinates:\n",
" * level (level) int32 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
" * level (level) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 ...\n",
" * level_lbound (level_lbound) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
"Data variables:\n",
" station_altitude (level) float64 95.0 85.0 77.2 70.9 64.4 58.9 ...\n",
Expand Down Expand Up @@ -85,73 +85,73 @@
"Coordinates:\n",
" * rlevel (rlevel) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 ...\n",
"Data variables:\n",
" reference__H2CO (rlevel) float64 1e-14 1.36e-14 2.62e-14 ...\n",
" reference__CHCL2F (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CH3D (rlevel) float64 2.15e-08 2.82e-08 3.36e-08 ...\n",
" reference__CLONO2 (rlevel) float64 3.5e-27 3.1e-24 1.86e-21 ...\n",
" reference__CCL3F (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CFC113 (rlevel) float64 1.08e-11 1.11e-11 1.13e-11 ...\n",
" reference__CH3F (rlevel) float64 5e-14 5e-14 5e-14 5e-14 5e-14 ...\n",
" reference__COF2 (rlevel) float64 1e-10 1e-10 1e-10 1e-10 1e-10 ...\n",
" reference__N2O5 (rlevel) float64 2.35e-21 3.19e-20 2.41e-19 ...\n",
" reference__HONO (rlevel) float64 3.16e-15 1e-14 1e-14 1e-14 ...\n",
" reference__HF (rlevel) float64 7.34e-10 7.34e-10 7.34e-10 ...\n",
" reference__O3668 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__HDO (rlevel) float64 4e-07 6.02e-07 8.5e-07 1.33e-06 ...\n",
" reference__NO2 (rlevel) float64 2.18e-12 1.06e-12 5.77e-13 ...\n",
" reference__CH3CCL3 (rlevel) float64 6.04e-35 5.56e-34 2.4e-33 ...\n",
" reference__HBR (rlevel) float64 1.35e-20 2.51e-18 3.99e-16 ...\n",
" reference__OH (rlevel) float64 2.71e-11 9.13e-11 2.06e-10 ...\n",
" reference__O3676 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__O2 (rlevel) float64 0.158 0.18 0.195 0.205 0.209 ...\n",
" reference__CLO (rlevel) float64 1.5e-14 5.33e-14 1.09e-13 ...\n",
" reference__COCLF (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 1e-16 ...\n",
" reference__H2O2 (rlevel) float64 1.39e-15 2.08e-14 2.91e-13 ...\n",
" reference__SF6 (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CO (rlevel) float64 2.34e-05 1.98e-05 1.64e-05 ...\n",
" reference__F142B (rlevel) float64 1.39e-12 1.43e-12 1.45e-12 ...\n",
" reference__CO2 (rlevel) float64 0.00019 0.000246 0.000285 ...\n",
" reference__F134A (rlevel) float64 1.25e-12 1.29e-12 1.3e-12 ...\n",
" reference__HO2 (rlevel) float64 1.33e-13 8.45e-13 4.92e-12 ...\n",
" reference__altitude (rlevel) float64 100.0 95.0 90.0 85.0 80.0 75.0 ...\n",
" reference__CH3F (rlevel) float64 5e-14 5e-14 5e-14 5e-14 5e-14 ...\n",
" reference__HOCL (rlevel) float64 6.96e-24 4.66e-22 1.53e-19 ...\n",
" reference__CH3D (rlevel) float64 2.15e-08 2.82e-08 3.36e-08 ...\n",
" reference__HCN (rlevel) float64 1.5e-10 1.5e-10 1.5e-10 1.5e-10 ...\n",
" reference__HI (rlevel) float64 3e-12 3e-12 3e-12 3e-12 3e-12 ...\n",
" reference__O3 (rlevel) float64 1.04e-06 1.68e-06 1.58e-06 ...\n",
" reference__CH3CL (rlevel) float64 4.04e-15 7.3e-15 1.22e-14 ...\n",
" reference__C2H6 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__F141B (rlevel) float64 1.45e-12 1.49e-12 1.51e-12 ...\n",
" reference__H218O (rlevel) float64 4e-07 6.02e-07 8.5e-07 1.33e-06 ...\n",
" reference__HCL (rlevel) float64 3.27e-10 5.97e-10 9.75e-10 ...\n",
" reference__CCL4 (rlevel) float64 5.38e-38 1.07e-36 5.6e-36 ...\n",
" reference__O3667 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__HNO3 (rlevel) float64 2.7e-14 2.73e-14 2.84e-14 ...\n",
" reference__CCL2F2 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__H2S (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__OCLO (rlevel) float64 1e-12 1e-12 1e-12 1e-12 1e-12 ...\n",
" reference__CH3I (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__HBR (rlevel) float64 1.35e-20 2.51e-18 3.99e-16 ...\n",
" reference__CO2 (rlevel) float64 0.00019 0.000246 0.000285 ...\n",
" reference__OCS (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__H218O (rlevel) float64 4e-07 6.02e-07 8.5e-07 1.33e-06 ...\n",
" reference__CCL3F (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CH3CCL3 (rlevel) float64 6.04e-35 5.56e-34 2.4e-33 ...\n",
" reference__CO (rlevel) float64 2.34e-05 1.98e-05 1.64e-05 ...\n",
" reference__F141B (rlevel) float64 1.45e-12 1.49e-12 1.51e-12 ...\n",
" reference__CH3BR (rlevel) float64 1.97e-41 2.6e-40 1.4e-39 ...\n",
" reference__CCL4 (rlevel) float64 5.38e-38 1.07e-36 5.6e-36 ...\n",
" reference__SF6 (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__NO (rlevel) float64 2.16e-05 3.57e-06 9.3e-07 ...\n",
" reference__pressure (rlevel) float64 0.0002758 0.0006169 0.001437 ...\n",
" reference__COF2 (rlevel) float64 1e-10 1e-10 1e-10 1e-10 1e-10 ...\n",
" reference__C2H2 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__N2O (rlevel) float64 2.89e-11 4.2e-11 5.99e-11 ...\n",
" reference__O2 (rlevel) float64 0.158 0.18 0.195 0.205 0.209 ...\n",
" reference__HCOOH (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CH3OH (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__O3676 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__C2H4 (rlevel) float64 1e-15 1e-15 1e-15 1e-15 1e-15 ...\n",
" reference__C2H6 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__N2O5 (rlevel) float64 2.35e-21 3.19e-20 2.41e-19 ...\n",
" reference__C3H8 (rlevel) float64 3e-15 3e-15 3e-15 3e-15 3e-15 ...\n",
" reference__O3686 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__HCN (rlevel) float64 1.5e-10 1.5e-10 1.5e-10 1.5e-10 ...\n",
" reference__CH3OH (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__CF4 (rlevel) float64 3e-11 3e-11 3e-11 3e-11 3e-11 ...\n",
" reference__CH3CL (rlevel) float64 4.04e-15 7.3e-15 1.22e-14 ...\n",
" reference__F142B (rlevel) float64 1.39e-12 1.43e-12 1.45e-12 ...\n",
" reference__CHCL2F (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__temperature (rlevel) float64 215.1 199.3 191.1 194.4 197.6 ...\n",
" reference__NH3 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__COCL2 (rlevel) float64 1e-16 1e-16 1e-16 1e-16 1e-16 ...\n",
" reference__OCS (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__SO2 (rlevel) float64 3.58e-13 1.16e-12 2.24e-12 ...\n",
" reference__HOCL (rlevel) float64 6.96e-24 4.66e-22 1.53e-19 ...\n",
" reference__OH (rlevel) float64 2.71e-11 9.13e-11 2.06e-10 ...\n",
" reference__C2H4 (rlevel) float64 1e-15 1e-15 1e-15 1e-15 1e-15 ...\n",
" reference__HO2NO2 (rlevel) float64 9.58e-20 7.32e-19 4.63e-18 ...\n",
" reference__N2 (rlevel) float64 0.777 0.78 0.781 0.781 0.781 ...\n",
" reference__CF4 (rlevel) float64 3e-11 3e-11 3e-11 3e-11 3e-11 ...\n",
" reference__HDO (rlevel) float64 4e-07 6.02e-07 8.5e-07 1.33e-06 ...\n",
" reference__HNO3 (rlevel) float64 2.7e-14 2.73e-14 2.84e-14 ...\n",
" reference__O3686 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__CH4 (rlevel) float64 1.22e-09 2.89e-09 7.3e-09 ...\n",
" reference__HO2NO2 (rlevel) float64 9.58e-20 7.32e-19 4.63e-18 ...\n",
" reference__O3668 (rlevel) float64 9e-08 4.6e-07 7e-07 5e-07 3e-07 ...\n",
" reference__altitude (rlevel) float64 100.0 95.0 90.0 85.0 80.0 75.0 ...\n",
" reference__HCOOH (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__H2S (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__SO2 (rlevel) float64 3.58e-13 1.16e-12 2.24e-12 ...\n",
" reference__COCL2 (rlevel) float64 1e-16 1e-16 1e-16 1e-16 1e-16 ...\n",
" reference__H2CO (rlevel) float64 1e-14 1.36e-14 2.62e-14 ...\n",
" reference__H2O2 (rlevel) float64 1.39e-15 2.08e-14 2.91e-13 ...\n",
" reference__CLONO2 (rlevel) float64 3.5e-27 3.1e-24 1.86e-21 ...\n",
" reference__NO2 (rlevel) float64 2.18e-12 1.06e-12 5.77e-13 ...\n",
" reference__OCLO (rlevel) float64 1e-12 1e-12 1e-12 1e-12 1e-12 ...\n",
" reference__F134A (rlevel) float64 1.25e-12 1.29e-12 1.3e-12 ...\n",
" reference__CFC113 (rlevel) float64 1.08e-11 1.11e-11 1.13e-11 ...\n",
" reference__HO2 (rlevel) float64 1.33e-13 8.45e-13 4.92e-12 ...\n",
" reference__N2O (rlevel) float64 2.89e-11 4.2e-11 5.99e-11 ...\n",
" reference__COCLF (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 1e-16 ...\n",
" reference__CCL2F2 (rlevel) float64 1e-14 1e-14 1e-14 1e-14 1e-14 ...\n",
" reference__H217O (rlevel) float64 4e-07 6.02e-07 8.5e-07 1.33e-06 ...\n",
" reference__NO (rlevel) float64 2.16e-05 3.57e-06 9.3e-07 ...\n",
" reference__HI (rlevel) float64 3e-12 3e-12 3e-12 3e-12 3e-12 ...\n",
" reference__H2O (rlevel) float64 8.12e-08 1.67e-07 3.67e-07 ...\n",
" reference__HF (rlevel) float64 7.34e-10 7.34e-10 7.34e-10 ...\n",
" reference__CHF2CL (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
" reference__pressure (rlevel) float64 0.0002758 0.0006169 0.001437 ...\n",
" reference__temperature (rlevel) float64 215.1 199.3 191.1 194.4 197.6 ...\n",
" reference__CH3I (rlevel) float64 0.0 0.0 0.0 0.0 0.0 0.0 0.0 0.0 ...\n",
"Attributes:\n",
" source: /home/bovy/sfit4/sfit4_v0.9.4.4/test_cases_NDACC/x.co/reference.prf"
]
Expand Down Expand Up @@ -179,21 +179,20 @@
"Dimensions: (band: 3, scan: 1, spectrum: 928)\n",
"Coordinates:\n",
" spec_scan (spectrum) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
" * scan (scan) int64 1\n",
" spec_wn (spectrum) float64 2.058e+03 2.058e+03 2.058e+03 ...\n",
" * band (band) int64 1 2 3\n",
" spec_band (spectrum) int64 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 ...\n",
" spec_wn (spectrum) float64 2.058e+03 2.058e+03 2.058e+03 ...\n",
" * scan (scan) int64 1\n",
" * spectrum (spectrum) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 14 ...\n",
"Data variables:\n",
" spec_observed (spectrum) float64 4.568 4.88 5.01 4.995 5.011 4.948 ...\n",
" spec_datetime (scan) datetime64[ns] 2011-03-25T09:52:32\n",
" spec_sza (scan) float64 77.96\n",
" spec_latitude (scan) float64 78.92\n",
" spec_observed (spectrum) float64 4.568 4.88 5.01 4.995 5.011 4.948 ...\n",
" spec_longitude (scan) float64 11.92\n",
" spec_initial_snr (band, scan) float64 184.5 191.3 153.3\n",
" spec_snr_initial (band, scan) float64 184.5 191.3 153.3\n",
" spec_earth_radius (scan) float64 6.358e+03\n",
" spec_latitude (scan) float64 78.92\n",
"Attributes:\n",
" spec_header__scan1: 25/03/2011, 09:52:32, SCAN TIME:142.52 SEC. RES= 0.0050 APOD FN = BX\n",
" source: /home/bovy/sfit4/sfit4_v0.9.4.4/test_cases_NDACC/x.co/spectrum"
]
},
Expand Down Expand Up @@ -254,7 +253,7 @@
},
{
"cell_type": "code",
"execution_count": 11,
"execution_count": 9,
"metadata": {
"collapsed": true
},
Expand All @@ -266,7 +265,7 @@
},
{
"cell_type": "code",
"execution_count": 12,
"execution_count": 10,
"metadata": {
"collapsed": false
},
Expand All @@ -275,12 +274,12 @@
"data": {
"text/plain": [
"<xarray.Dataset>\n",
"Dimensions: (level: 44, level_lbound: 44)\n",
"Dimensions: (level: 43, level_lbound: 44)\n",
"Coordinates:\n",
" * level (level) int64 0 1 2 3 4 5 6 7 8 9 10 11 12 13 ...\n",
" * level_lbound (level_lbound) int64 0 1 2 3 4 5 6 7 8 9 10 11 ...\n",
"Data variables:\n",
" station_altitude (level) float64 nan 95.0 85.0 77.2 70.9 64.4 ...\n",
" station_altitude (level) float64 95.0 85.0 77.2 70.9 64.4 58.9 ...\n",
" station_altitude_lbound (level_lbound) float64 100.0 90.0 80.0 74.4 ...\n",
" gas__profile__CO__sigma (level) float64 0.1268 0.1134 0.1225 0.1342 ...\n",
" gas__profile__O3__sigma (level) float64 0.1268 0.1134 0.1225 0.1342 ...\n",
Expand All @@ -291,7 +290,7 @@
" source: /home/bovy/sfit4/sfit4_v0.9.4.4/test_cases_NDACC/x.co/station.layers"
]
},
"execution_count": 12,
"execution_count": 10,
"metadata": {},
"output_type": "execute_result"
}
Expand Down
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