makefile

Makefile

@@ -1,16 +1,5 @@
 R_PKG_VERSION=0.0.2
-
-ifeq ($(whoami), taylor)
-	CC=gcc-4.9
-else
-  CC=gcc
-endif
-
-ifeq ($(whoami), ryantibs)
-	PREFIX=sudo
-else
-	PREFIX=
-endif
+PREFIX=
 
 R_DIR=R_pkg
 C_DIR=c_lib/glmgen
@@ -21,20 +10,35 @@ IDIR=../include/
 
 all:
 	cd ${R_DIR}; ${PREFIX} R CMD build glmgen
-	cd ${R_DIR}; ${PREFIX} R CMD INSTALL glmgen_${R_PKG_VERSION}.tar.gz
-	cd ${R_DIR}; ${PREFIX} R CMD CHECK --as-cran glmgen_${R_PKG_VERSION}.tar.gz
-	cd ${R_DIR}; ${PREFIX} rm -rf glmgen.Rcheck
-	cd ${R_DIR}; ${PREFIX} rm glmgen_${R_PKG_VERSION}.tar.gz
-
-	cp R_pkg/glmgen/src/tf/*.c c_lib/glmgen/src/tf/
-	cp R_pkg/glmgen/src/utils/*.c c_lib/glmgen/src/utils/
-	cp R_pkg/glmgen/inst/include/*.h c_lib/glmgen/include
 
 	cd ${C_DIR}; mkdir -p lib
 	cd ${C_DIR}; mkdir -p obj
 	cd ${C_DIR}/obj; ${CC} ${CLFAGS2} -c -fPIC ../src/csparse/*.c -I${IDIR}
 	cd ${C_DIR}/obj; ${CC} ${CFLAGS}  -c -fPIC ../src/utils/*.c -I${IDIR}
 	cd ${C_DIR}/obj; ${CC} ${CFLAGS}  -c -fPIC ../src/tf/*.c -I${IDIR}
 	cd ${C_DIR}; ${CC} -shared -o lib/libglmgen.so ${OBJ}
+
+clean:
+	cd ${R_DIR}; ${PREFIX} rm -rf glmgen_${R_PKG_VERSION}.tar.gz
+
 	cd ${C_DIR}; rm -rf lib
 	cd ${C_DIR}; rm -rf obj
+
+doc:
+	git checkout gh-pages
+	git rebase master
+	cd ${R_DIR}; ${PREFIX} R CMD build glmgen
+	cd ${R_DIR}; ${PREFIX} R CMD CHECK --as-cran glmgen_${R_PKG_VERSION}.tar.gz
+	cd ${R_DIR}; ${PREFIX} mv glmgen.Rcheck/glmgen-manual.pdf ..
+	cd ${R_DIR}; ${PREFIX} rm -rf glmgen.Rcheck
+	cd ${R_DIR}; ${PREFIX} rm glmgen_${R_PKG_VERSION}.tar.gz
+
+	cd ${C_DIR}; doxygen Doxyfile
+	cd ${C_DIR}; mv html ../..
+	cd ${C_DIR}; rm -rf latex
+
+	git add -f glmgen-manual.pdf
+	git add html
+	git commit -m "auto commit documentation"
+	git push origin gh-pages
+	git checkout master