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R-CMD-check.yaml
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# For help debugging build failures open an issue on the RStudio community with the 'github-actions' tag.
# https://community.rstudio.com/new-topic?category=Package%20development&tags=github-actions
# code generated according to https://deanattali.com/blog/migrating-travis-to-github/
# via usethis::use_github_action_check_standard()
# run in subdirectory:
# https://stackoverflow.com/questions/57806624/github-actions-how-to-build-project-in-sub-directory
# https://stackoverflow.com/questions/58139175/running-actions-in-another-directory
# https://docs.github.com/en/free-pro-team@latest/actions/reference/workflow-syntax-for-github-actions#jobsjob_idstepsworking-directory
# https://github.community/t/github-actions-working-directory-incorrectly-documented-unexpected-value-working-directory/16076
on:
push:
branches:
- main
- master
- github_actions
pull_request:
branches:
- main
- master
name: R-CMD-check
jobs:
R-CMD-check:
if: "! contains(github.event.head_commit.message, '[skip ci]')"
runs-on: ${{ matrix.config.os }}
name: ${{ matrix.config.os }} (${{ matrix.config.r }})
strategy:
fail-fast: false
matrix:
config:
- {os: ubuntu-latest, r: 'release'}
## - {os: windows-latest, r: 'release'}
## - {os: macOS-latest, r: 'release'}
env:
R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
RSPM: ${{ matrix.config.rspm }}
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
## attempt to control over-parallelization
OPENBLAS_NUM_THREADS: 1
OMP_NUM_THREADS: 1
steps:
- uses: actions/checkout@v4
- uses: r-lib/actions/setup-pandoc@v2
- uses: r-lib/actions/setup-r@v2
with:
r-version: ${{ matrix.config.r }}
http-user-agent: ${{ matrix.config.http-user-agent }}
use-public-rspm: true
- uses: r-lib/actions/setup-r-dependencies@v2
with:
extra-packages: any::rcmdcheck
needs: check
working-directory: ./glmmTMB
upgrade: 'TRUE'
# https://github.com/lme4/lme4/issues/756
- name: Install extra LaTeX packages
if: runner.os == 'Linux'
run: sudo apt-get install texlive-science texlive-latex-extra texlive-bibtex-extra
working-directory: ./glmmTMB
- uses: r-lib/actions/check-r-package@v2
env:
_R_CHECK_CRAN_INCOMING_REMOTE_: false
NOT_CRAN: true
with:
upload-snapshots: true
working-directory: ./glmmTMB