include wikidata as sample taxonomy; related to https://github.com/gl… #144
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| # This workflow attempt to align taxonomic names | |
| # from selected datasets | |
| # with selected taxonomic resources. | |
| # | |
| # For more information see: https://github.com/globalbioticinteractions/name-alignment-template | |
| name: Name Alignment by Nomer | |
| on: | |
| push: | |
| branches: [ '*' ] | |
| pull_request: | |
| branches: [ '*' ] | |
| schedule: | |
| - cron: "0 0 * * 1" | |
| jobs: | |
| align: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - name: Set up JDK 1.8 | |
| uses: actions/setup-java@v4 | |
| with: | |
| distribution: 'temurin' | |
| java-version: '8' | |
| - name: Download alignment script | |
| run: curl --silent -L "https://raw.githubusercontent.com/globalbioticinteractions/globinizer/master/align-names.sh" > align-names.sh | |
| - name: Align names | |
| run: bash align-names.sh "${GITHUB_REPOSITORY}" | |
| - name: Share alignment report | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: alignment-report | |
| path: | | |
| names-aligned.csv | |
| names-aligned.tsv | |
| names-aligned.txt | |
| names-aligned.html | |
| data/ |